GgaINT0098560 @ galGal4
Intron Retention
Gene
ENSGALG00000011036 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoproteins A2/B1 [Source:RefSeq peptide;Acc:NP_001026156]
Coordinates
chr2:32323580-32327887:-
Coord C1 exon
chr2:32327707-32327887
Coord A exon
chr2:32323691-32327706
Coord C2 exon
chr2:32323580-32323690
Length
4016 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCTAATCTTCTCTGTGATAGAGG
3' ss Score
4.87
Exon sequences
Seq C1 exon
GCGCCGGCGGCTGACGGGGCAGAGCGCACGACGCCGCCTACGCGCCAGCCGCAACCTCCTCCCGTTGTCGCCGCCAGCACAGGAGGGGGCCAAGACGTCTGTCCCACGGGGGGCGAGCGCAGGACCGCGCCAGGCGTCCAAACGGAGGAAGATGCCTCGCGGCGACAGAGAGAGCGACTGG
Seq A exon
GTGAGGGCGGCCGGCGGGCCGCGGGCGGCCGCCGCCATCATGGCCGCCGCCGCGAGGGCGGGAGAGGGCCCGGCCGGGGGACTGAGGCGGGCGGGAAAGGCATTTCGTGGCGGCCGCCGGAGATCCGTGCGTGGCTGAGGGGATCGAGAGATCGGGAGGCCCGGCGCCGTGTCGCTGCTGCTGAGCGGCAGCACTCACCCTTTCTCGCCGCGCGTGAGAGGAAAGGGGAGGGCGGGAGGAAGGTGAGCGCTGCGTGGCTGCCGGCGGAACGCGGCCGGCCGCGGCCGGGCCCGCCTCTCTCCGCCGGGCCGAACTCCAGGGTTATCGCTTCCTCCCGCCCGAACGGAGGGGGAGGGGGCCGCGGCGCTGCGTTGTGCCGTGCTCCCGCCCGCAGAGGGTGGTGGGGGTGCGGGGCCGCTGCGGCTAATTATAACTCCGCACTACGAGGTGCAGTCTTCGGCAATTTCCGGAATAGGGGGGGGGAGGAAAGCAACGCTGTGCCAGCGACGCTCGGGCCGCTTCGGATCCGCTCGGGCACGAATTAGAGAGCTCTTCCGCTGTCGGAAATCGCCGAGTGGGTTGGGGAGTTGGTGAGCTCTGCGTCTTTTTTTTCCGGAAATTGCCGAACTTGAGCCGAGTGCCGCTTTCGTCGGTGTCGGCTGATTCCGGAAATCGCCGAAGCGAGCCGAACGCGCTGCCATTTCTGTTTCGGCTGTTTCCGGCGACTGCCGAAGCGGATAAGCTCGGCGAGGACGACTCCTTCGGCTCATTTCGGAGACGGCCATTAGTAACGGCGTCGATGACTTTTTATTAGGTGACAAAAACACAGAGGGGCGTTGCGCAGAACCGCTGCCCCTCAGGACTGATTTAGGTTCTAGAGCCGAGCTATTTTTTAATTAAACCCCGGAGGCGCGGCCGGGTGGAGGAGGAGGAGGAGGGCGCTCGCAGTGCGCGGAGCTGAATTTCAAATTACGTAACAGCTGCGGCAGCCATTGCTGAGGGCCGTGCGCTGCGCCGGGCAGGGACCGCCACCATGAAGAACATGGTACGTGTGGGGGGCGGCCCGGGGCTCAATTTTAAGGGGGTGCTGTTCTTGGCTCCGCGCAGGGAGTGCGTTTTTGCGGGTCTGAGGGTTAAGAGAGGAGCGTGGCTGAGCTCAGTCGGCGCGGGCCCGGGAGGCGCTGCGGCTGTTGGGCCGCTCTGCGCGGGGGAGAGCAGCGACGGGGGAGGAAGGTTCTGGAAGCGGTGGTCGGGGCCGGGTTGCTGCCGAGGGGAGGCGGATGCTTGCGGTTCAGGCGGGGGCGGGTTAGGTCTTTCGAGGTGGCTCTCGGAGCACGGCCATCTCAGGGCACGGCGATGGAGATCGGTGGCAGCGCGGCCCGAGGCGCGCAGTTGCCCCGAGGGCAGCAGCGGCGCCGTTGCCGGTAATGGCGGCGGGAGGGGGAGGGGGAAAATGGCGGCGCCGAGAGCGGCGGGGGAGGGGTGCGGGAGGCCGCGCCTGCAAACTGACACCCCGCGTCTGGCCGTGCGGTGGTGCGCGGCAGGTGGCTTCCGCGCAGCCCTTAGGGCTCGCCTGGCGCTGGTGGGCGGTAGGCTGGGATCGGTTTCCCGGCAGTTGTCCTTCCCGCCGCGCCGCGCTCCCTGGAGGCGGCGGCTCCGGGCGCCATTTTGCTCCCTGGCTGCGGGGCTGCTCTGCTGATAGCCGCCACATGGCGGAGCCGCCGCCTCCCCGCTCGCTCCCTCGGCGTCAGGCGGCGGGGCGGGGCGGGCCGGCCTCGGGCTGGGGCGCGGCGAGGCGCTGCGGCGGGCTGAAGGAGGAGCAGCGCCATGCTGGGGGTCCCGCCCGGCTTCTGACTGAAGATGCTGGGGAGCTGTAAGATTTTCACTCGCAGTCTGCCCCTGCCTTAGAATGTGCTGCGGAGGCATCCTAGGAGGCTTTTCATTTGGCTTCTGTATTGAGAGCGGTAGAAGAGGCAGCGGGTTGTATTTAGTGGAGGGTTTTCGTCAAATATCAGGAAAGGACTGCAGTTAAAACAGTTTATAGTCGTGCACGTTATAACTGCAGCATCAATGCACGGTTACCAGAGGCAGCTGGGCCCTGGTGGGGTTGTGGTTGCAGACTCACAACTAAATACATGTAAGACAGTGCCTACGTTAGGAACCTTTGGAGCAGTATTTAGGATATTTTTGCACAGTATTGTTCTTTCGTGTAGTGATAGTGATGTATTGCCACATCCTGACCTGTGCATATGCCTACCTGTTGCTTTGGCTAGGGCACGTAGTGGTAGGACAGTACATGATCGATGAGCGATGTATGAACTTGCAGTTGTTCTGTTTATCAGTAATACCTGGTACCCGTTTGCTCTCTAAAAAGCAAATGTAGTTATTACGGTTGGTAGGTAGAATTCTTGGACTTTCATTTTCAAATATAGGCTTAATGTTTAGTGGGAAAATCAATATGCCCGATTCTCAACTTTTTAACGTAGTTCTGCTATTTGATGTATGCACATATGGCAATTGTGTGGGGAAAAGCATCTCTCACGGGCCAGTGAAGCCAATAGGTAGTGCTTAGTCTTGAAGCAGTTGAACTGAAGTAGTCGGAAGAGAGTGGCATTTGTGCATTTTAAGCAATCACTGGTGAATGTTTCTTTGCTAGCCCACCCAGGCCAGAAATGATAGCACGGCTTCCAACATGTAGCTTTAATTCAAGTCTCAAATAGAGCATCCTTTTCCTCATTCTGTTCGAATGATTCTCTGAAGGGAAGCTTCATATAATGTGGGTTTGTTGTGTCAAAACTATCCTCCCTAATTTTTCCTGTCTGTACATCAAAAGGACAGCATTAGCTTGCTTTATATTTCCCAGAAGAAAAGATACTTTGAATCTACTGCTGGGTGTAATGCTTTTAAGCGACGTTGAAATAAGTGTTCTTAAACAGCATACATATTTGGAAGTGGAAAAGAAAAAGTCAGTAGTTGTTGCATTTTTTCTTAGCTGATAATACAGCAATGCATTTTTTTTACAAAACCAATTCAGTATCATCTCTGATAACGTCTTCCATGTTGCGTAGCTGTAGATCATCCCTGCCTCCGACAGCTTCAGAAAGCGTGTGGATTGGCTGAATGCTTTCCAAAGTGTCTGAGCAGTGTGCTATTTCATTTCCTAAGTCTCGTTAGTTAAAAGAACATTTTTCCTTTTTAAAATGGCAAGTGTAACACTGACATAATAATTGCATTTAAGTGCTCTTGGGAGAAAGCCTAGCTGGACAGTTACCTCCTTCAAACAAGATCGTGACATTCTACAGTTTGTTAAAGGGTCTTTTGCTATTTGGCATATGGAATAGCAATATATATCATCCAGTGATGCTACTGCTTATGGAAAAGAACATTTACATTGCATTGTTAGTATATTAAGTACTTGGGGGTTGAAAGGCTGTTAGTTTCTGCATTATGATTACTGCCTACAAAAGAGATGTAATATCTTCTTATCAAGCCTTGGGCTTTTTTTTTAATGATTCACTTGTTGTCATAGCAGAAATGTCTGCTGAATGAGCTCAGTGAAAATTTCTTCAAGAAGTGATTAAGTCTTTTTTTCTGAAAATGTAGTTCATGCACTTAAAGGGAAATGGGAGGAATTTTTCCCAGTTGGTTTTGATGTTGCTGATGTTGGTAGGGGATGCATCTACTGCTAATTCTAGTGCTGCTGGATCCTAGATAAATTTTACAGATCTTCCAGCGTACTTCATTTGAATAATGATAAAATCTGAGTCAGTGGCCTAGAATGTTTTAACTCTTTTTTTTTTTTAATTTCTTAATGGTTTGTGCAAATAGCTTGATAGTATTGATGTGCAGTAATTTGAATTATATATTTTTTAAATATTTGATATCTGGAATAGAATCAGATAGTATGAATGGATTCGTGTTTCCTGTAATAAGGACGCTTCGTTAGTTTGGAGCATTGTTTTTTGTCTAACGCAGTTGTAAAAAGTTTTCTATTAACCTAATCTTCTCTGTGATAG
Seq C2 exon
AGGGAAAAGGAGCAGTTCCGCAAGCTGTTCATTGGCGGCTTAAGCTTTGAAACAACAGAGGAAAGCTTGAGGAATTACTACGAGCAATGGGGAAAGCTTACAGATTGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036:ENSGALT00000017975:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142591=RRM_6=PU(40.0=75.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]