GgaINT0098560 @ galGal3
Intron Retention
Gene
ENSGALG00000011036 | Q5ZME1_CHICK
Description
NA
Coordinates
chr2:32123534-32127841:-
Coord C1 exon
chr2:32127661-32127841
Coord A exon
chr2:32123645-32127660
Coord C2 exon
chr2:32123534-32123644
Length
4016 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CCTAATCTTCTCTGTGATAGAGG
3' ss Score
4.87
Exon sequences
Seq C1 exon
GCGCCGGCGGCTGACGGGGCAGAGCGCACGACGCCGCCTACGCGCCAGCCGCAACCTCCTCCCGTTGTCGCCGCCAGCACAGGAGGGGGCCAAGACGTCTGTCCCACGGGGGGCGAGCGCAGGACCGCGCCAGGCGTCCAAACGGAGGAAGATGCCTCGCGGCGACAGAGAGAGCGACTGG
Seq A exon
GTGAGGGCGGCCGGCGGGCCGCGGGCGGCCGCCGCCATCATGGCCGCCGCCGCGAGGGCGGGAGAGGGCCCGGCCGGGGGACTGAGGCGGGCGGGAAAGGCATTTCGTGGCGGCCGCCGGAGATCCGTGCGGGGCTGAGGGGAGAGAGAGAGCGGGAGGCCCGGCGCCGTGTCGCTGCTGCTGAGCGGCAGCACTCACCCTTTCTCGCCGCGCGTGAGAGGAAAGGGGAGGGCGGGAGGAAGGTGAGCGCTGCGTGGCTGCCGGCGGAACGCGGCCGGCCGCGGCCGGGCCCGCCTCTCTCCGCCGGGCCGAACTCCAGGGTTATCGCTTCCTCCCGCCCGAACGGAGGGGGAGGGGGCCGCGGCGCTGCGTTGTGCCGTGCTCCCGCCCGCAGAGGGTGGTGGGGGTGCGGGGCCGCTGCGGCTAATTATAACTCCGCACTACGAGGTGCAGTCTTCGGCAATTTCCGGAATAGGGGGGGGGAGGAAAGCAACGCTGTGCCAGCGACGCTCGGGCCGCTTCGGATCCGCTCGGGCACGAATTAGAGAGCTCTTCCGCTGTCGGAAATCGCCGAGTGGGTTGGGGAGTTGGTGAGCTCTGCGTCTTTTTTTTCCGGAAATTGCCGAACTTGAGCCGAGTGCCGCTTTCGTCGGTGTCGGCTGATTCCGGAAATCGCCGAAGCGAGCCGAACGCGCTGCCATTTCTGTTTCGGCTGTTTCCGGCGACTGCCGAAGCGGATAAGCTCGGCGAGGACGACTCCTTCGGCTCATTTCGGAGACGGCCATTAGTAACGGCGTCGATGACTTTTTATTAGGTGACAAAAACACAGAGGGGCGTTGCGCAGAACCGCTGCCCCTCAGGACTGATTTAGGTTCTAGAGCCGAGCTATTTTTTAATTAAACCCCGGAGGCGCGGCCGGGTGGAGGAGGAGGAGGAGGGCGCTCGCAGTGCGCGGAGCTGAATTTCAAATTACGTAACAGCTGCGGCAGCCATTGCTGAGGGCCGTGCGCTGCGCCGGGCAGGGACCGCCACCATGAAGAACATGGTACGTGTGGGGGGCGGCCCGGGGCTCAATTTTAAGGGGGTGCTGTTCTTGGCTCCGCGCAGGGAGTGCGTTTTTGCGGGTCTGAGGGTTAAGAGAGGAGCGTGGCTGAGCTCAGTCGGCGCGGGCCCGGGAGGCGCTGCGGCTGTTGGGCCGCTCTGCGCGGGGGAGAGCAGCGACGGGGGAGGAAGGTTCTGGAAGCGGTGGTCGGGGCCGGGTTGCTGCCGAGGGGAGGCGGATGCTTGCGGTTCAGGCGGGGGCGGGTTAGGTCTTTCGAGGTGGCTCTCGGAGCACGGCCATCTCAGGGCACGGCGATGGAGATCGGTGGCAGCGCGGCCCGAGGCGCGCAGTTGCCCCGAGGGCAGCAGCGGCGCCGTTGCCGGTAATGGCGGCGGGAGGGGGAGGGGGAAAATGGCGGCGCCGAGAGCGGCGGGGGAGGGGTGCGGGAGGCCGCGCCTGCAAACTGACACCCCGCGTCTGGCCGTGCGGTGGTGCGCGGCAGGTGGCTTCCGCGCAGCCCTTAGGGCTCGCCTGGCGCTGGTGGGCGGTAGGCTGGGATCGGTTTCCCGGCAGTTGTCCTTCCCGCCGCGCCGCGCTCCCTGGAGGCGGCGGCTCCGGGCGCCATTTTGCTCCCTGGCTGCGGGGCTGCTCTGCTGATAGCCGCCACATGGCGGAGCCGCCGCCTCCCCGCTCGCTCCCTCGGCGTCAGGCGGCGGGGCGGGGCGGGCCGGCCTCGGGCTGGGGCGCGGCGAGGCGCTGCGGCGGGCTGAAGGAGGAGCAGCGCCATGCTGGGGGTCCCGCCCGGCTTCTGACTGAAGATGCTGGGGAGCTGTAAGATTTTCACTCGCAGTCTGCCCCTGCCTTAGAATGTGCTGCGGAGGCATCCTAGGAGGCTTTTCATTTGGCTTCTGTATTGAGAGCGGTAGAAGAGGCAGCGGGTTGTATTTAGTGGAGGGTTTTCGTCAAATATCAGGAAAGGACTGCAGTTAAAACAGTTTATAGTCGTGCACGTTATAACTGCAGCATCAATGCACGGTTACCAGAGGCAGCTGGGCCCTGGTGGGGTTGTGGTTGCAGACTCACAACTAAATACATGTAAGACAGTGCCTACGTTAGGAACCTTTGGAGCAGTATTTAGGATATTTTTGCACAGTATTGTTCTTTCGTGTAGTGATAGTGATGTATTGCCACATCCTGACCTGTGCATATGCCTACCTGTTGCTTTGGCTAGGGCACGTAGTGGTAGGACAGTACATGATCGATGAGCGATGTATGAACTTGCAGTTGTTCTGTTTATCAGTAATACCTGGTACCCGTTTGCTCTCTAAAAAGCAAATGTAGTTATTACGGTTGGTAGGTAGAATTCTTGGACTTTCATTTTCAAATATAGGCTTAATGTTTAGTGGGAAAATCAATATGCCCGATTCTCAACTTTTTAACGTAGTTCTGCTATTTGATGTATGCACATATGGCAATTGTGTGGGGAAAAGCATCTCTCACGGGCCAGTGAAGCCAATAGGTAGTGCTTAGTCTTGAAGCAGTTGAACTGAAGTAGTCGGAAGAGAGTGGCATTTGTGCATTTTAAGCAATCACTGGTGAATGTTTCTTTGCTAGCCCACCCAGGCCAGAAATGATAGCACGGCTTCCAACATGTAGCTTTAATTCAAGTCTCAAATAGAGCATCCTTTTCCTCATTCTGTTCGAATGATTCTCTGAAGGGAAGCTTCATATAATGTGGGTTTGTTGTGTCAAAACTATCCTCCCTAATTTTTCCTGTCTGTACATCAAAAGGACAGCATTAGCTTGCTTTATATTTCCCAGAAGAAAAGATACTTTGAATCTACTGCTGGGTGTAATGCTTTTAAGCGACGTTGAAATAAGTGTTCTTAAACAGCATACATATTTGGAAGTGGAAAAGAAAAAGTCAGTAGTTGTTGCATTTTTTCTTAGCTGATAATACAGCAATGCATTTTTTTTACAAAACCAATTCAGTATCATCTCTGATAACGTCTTCCATGTTGCGTAGCTGTAGATCATCCCTGCCTCCGACAGCTTCAGAAAGCGTGTGGATTGGCTGAATGCTTTCCAAAGTGTCTGAGCAGTGTGCTATTTCATTTCCTAAGTCTCGTTAGTTAAAAGAACATTTTTCCTTTTTAAAATGGCAAGTGTAACACTGACATAATAATTGCATTTAAGTGCTCTTGGGAGAAAGCCTAGCTGGACAGTTACCTCCTTCAAACAAGATCGTGACATTCTACAGTTTGTTAAAGGGTCTTTTGCTATTTGGCATATGGAATAGCAATATATATCATCCAGTGATGCTACTGCTTATGGAAAAGAACATTTACATTGCATTGTTAGTATATTAAGTACTTGGGGGTTGAAAGGCTGTTAGTTTCTGCATTATGATTACTGCCTACAAAAGAGATGTAATATCTTCTTATCAAGCCTTGGGCTTTTTTTTTAATGATTCACTTGTTGTCATAGCAGAAATGTCTGCTGAATGAGCTCAGTGAAAATTTCTTCAAGAAGTGATTAAGTCTTTTTTTCTGAAAATGTAGTTCATGCACTTAAAGGGAAATGGGAGGAATTTTTCCCAGTTGGTTTTGATGTTGCTGATGTTGGTAGGGGATGCATCTACTGCTAATTCTAGTGCTGCTGGATCCTAGATAAATTTTACAGATCTTCCAGCGTACTTCATTTGAATAATGATAAAATCTGAGTCAGTGGCCTAGAATGTTTTAACTCTTTTTTTTTTTTAATTTCTTAATGGTTTGTGCAAATAGCTTGATAGTATTGATGTGCAGTAATTTGAATTATATATTTTTTAAATATTTGATATCTGGAATAGAATCAGATAGTATGAATGGATTCGTGTTTCCTGTAATAAGGACGCTTCGTTAGTTTGGAGCATTGTTTTTTGTCTAACGCAGTTGTAAAAAGTTTTCTATTAACCTAATCTTCTCTGTGATAG
Seq C2 exon
AGGGAAAAGGAGCAGTTCCGCAAGCTGTTCATTGGCGGCTTAAGCTTTGAAACAACAGAGGAAAGCTTGAGGAATTACTACGAGCAATGGGGAAAGCTTACAGATTGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036:ENSGALT00000017975:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF142591=RRM_6=PU(40.0=75.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]