GgaALTD1012295-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000006424 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr13:15099553-15100763:-
Coord C1 exon
chr13:15100596-15100763
Coord A exon
chr13:15100325-15100595
Coord C2 exon
chr13:15099553-15099669
Length
271 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GTCTTCTGTTTTCTGATCAGGTT
3' ss Score
10.38
Exon sequences
Seq C1 exon
GCATGCTATGGCATCCTGAAGGTCCCCATCGGCAGCTGGCTGTGCCGGACCTGCGCCCTCGGCGTCCAGCCCAAGTGTTTGCTGTGCCCGAAGAGAGGGGGAGCACTGAAACCCACTCGGAGTGGGACGAAATGGGTCCACGTTAGCTGTGCCTTATGGATACCTGAA
Seq A exon
GTAAGTAAGATGCTTTCTAGCCTTTTCTTGAAATCTGGCACAGACGTGATTTCCAGGTGTAGCAGAAATGCAAAGTCACAGCTTGAAGCAGTGATTGAGCACCTGGTGGGAAGGCAGGGCCAACCCAGGGGAGCTCAGGTGTATGCAATGCAGCTGAGTGCCCAGAAGGGCTGGAGCCAGGATCCACCCCTTCCCAGACCTCATTTAAAGGTTGGCAGTGGGGGTGAGGGGATCTCACTGGGGATCCCTGCCTGTGTGAGGCCTTCCAAAG
Seq C2 exon
GTTAGCATTGGATGTCCTGAAAAAATGGAACCCATTACGAAGATCTCACATATCCCAGCGAGCAGATGGGCTCTGTCCTGCAGCCTCTGCAAGGAATGCACGGGGACCTGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006424-21-18,22-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(21.7=17.9),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(33.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCATCCTGAAGGTCCCC
R:
CTGAATGCAGGTCCCCGTG
Band lengths:
279-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]