GgaALTD1012295-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000006424 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr13:15099553-15100763:-
Coord C1 exon
chr13:15100596-15100763
Coord A exon
NA
Coord C2 exon
chr13:15099553-15099669
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
GTCTTCTGTTTTCTGATCAGGTT
3' ss Score
10.38
Exon sequences
Seq C1 exon
GCATGCTATGGCATCCTGAAGGTCCCCATCGGCAGCTGGCTGTGCCGGACCTGCGCCCTCGGCGTCCAGCCCAAGTGTTTGCTGTGCCCGAAGAGAGGGGGAGCACTGAAACCCACTCGGAGTGGGACGAAATGGGTCCACGTTAGCTGTGCCTTATGGATACCTGAA
Seq A exon
NA
Seq C2 exon
GTTAGCATTGGATGTCCTGAAAAAATGGAACCCATTACGAAGATCTCACATATCCCAGCGAGCAGATGGGCTCTGTCCTGCAGCCTCTGCAAGGAATGCACGGGGACCTGCATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006424-21-18,22-18-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(21.7=17.9),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(33.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCATCCTGAAGGTCCCC
R:
CTGAATGCAGGTCCCCGTG
Band lengths:
279-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]