HsaALTD1002022-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000043143 | JADE2
Description
jade family PHD finger 2 [Source:HGNC Symbol;Acc:HGNC:22984]
Coordinates
chr5:134562200-134564610:+
Coord C1 exon
chr5:134562200-134562367
Coord A exon
NA
Coord C2 exon
chr5:134564494-134564610
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
GCCCCCTGTGTCCTGCCCAGGTC
3' ss Score
9.67
Exon sequences
Seq C1 exon
GCATGCTACGGGATCCTCAAGGTGCCCACGGGCAGCTGGCTGTGCCGGACGTGTGCCCTGGGTGTCCAGCCAAAGTGCCTGCTCTGCCCCAAGCGAGGAGGAGCCTTGAAGCCCACTAGAAGTGGGACCAAGTGGGTGCATGTCAGCTGTGCCCTATGGATTCCTGAG
Seq A exon
NA
Seq C2 exon
GTCAGCATCGGCTGCCCAGAGAAGATGGAGCCCATCACCAAGATCTCGCATATCCCAGCCAGCCGCTGGGCTCTGTCCTGCAGCCTCTGCAAGGAATGCACAGGCACCTGCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000043143-31-23,32-23-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(22.9=19.6),PF138311=PHD_2=PD(51.4=32.1),PF138321=zf-HC5HC2H_2=PU(28.3=57.1)
A:
NA
C2:
PF138321=zf-HC5HC2H_2=FE(33.6=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTTGAAGCCCACTAGA
R:
AGATCTTGGTGATGGGCTCCA
Band lengths:
115-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains