GgaALTD1013945-1/5 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002478 | MATR3
Description
matrin-3 [Source:RefSeq peptide;Acc:NP_989478]
Coordinates
chr13:1842326-1851125:-
Coord C1 exon
chr13:1851025-1851125
Coord A exon
NA
Coord C2 exon
chr13:1842326-1843404
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
AACTGCTTGTTTTTCTACAGAAT
3' ss Score
8.87
Exon sequences
Seq C1 exon
CCCGCTGCCGGTTTGCGTTGCTTTTTTTTTTCCCCTTTGCCAGAACATTCTAACGCGCCGAGCGGGGCCCGGAGCCCGTTCTCACAGACGCCTCCGCGCAG
Seq A exon
NA
Seq C2 exon
AATTGTCTGGTGTTTCTCAGCTTGAAGAAGATCTGCAGTCATTATTGATCCTCTTTCTTGGCGTTACCATTTTCGAAGTGAAGTTTGCCTAGCTTTCTAGTGCGAGCTTTCTTTTCAGCCATCTTAAACCAAACCAAACAAACAAACAAAGATTTTGATCCGTAAAGTAGACAAGCTATAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTGAGTAGGGATTCACAAGGTCATGGGCGTGAGCTCTCTGCAGGAATAGGCCTTCTTGCTGCTGCTACCCAGTCTTTAAATATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTAGCTTAATGAATCTTGGAATGAGTTCTTCATTGAACCAACAAGGATCTCATAGTGCACTGTCTTCTGGTAGTACCTCTTCCCATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCGCTCCCTTTGTCTTCTCAGCACCGTGGAGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478-4-0,5-0,6-0,7-0,8-0-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.694
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACATTCTAACGCGCCGA
R:
TGACTGCAGATCTTCTTCAAGCT
Band lengths:
102-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]