GgaINT1017541 @ galGal4
Intron Retention
Gene
ENSGALG00000002478 | MATR3
Description
matrin-3 [Source:RefSeq peptide;Acc:NP_989478]
Coordinates
chr13:1842326-1851149:-
Coord C1 exon
chr13:1851025-1851149
Coord A exon
chr13:1843405-1851024
Coord C2 exon
chr13:1842326-1843404
Length
7620 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
AACTGCTTGTTTTTCTACAGAAT
3' ss Score
8.87
Exon sequences
Seq C1 exon
TCGGCCGTGCCGAGGGGAGGCCGCCCCGCTGCCGGTTTGCGTTGCTTTTTTTTTTCCCCTTTGCCAGAACATTCTAACGCGCCGAGCGGGGCCCGGAGCCCGTTCTCACAGACGCCTCCGCGCAG
Seq A exon
GTAACGGCTCCGTCCCGCCGGGCGCCGGGCCTAGGAGCGGCGGGACTATGGGCGGCCGCGGCCCGGGGCAGGTAACGGCGGCGCGCGGGGCTGAGGGAGGCGGAGGGCGGGCGCGAACCCGCAGCCCCGCGGCCGGGGGCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCGGCCCGCCGCTGCCGGCCTGCTGCACGGGCGGCCGGGCGTTGCGTGCCCCGACGGCCGATTCATCCAGTGCTAATTAATGAATTAGGCCGTAGGAGGGTGACGGAGGAAGCGCTCTTTCTATTCAGTTTCACTTTCGTGCGATTGGGGCTGCGGTTACAAATGGCCGCAAGCGGTGCCGCGCTGTCTGCGCGCCGTGTGTTCTGCCGTGTTTGAAATAAGCGAAACATCAGAACGAGCTCTGTGAGCCTCGGCTGCGGCAGCGCTCCGACGAAGCCTTTGTGCTGCAGGGTGGAAGCTGAAAAATCCATCTGAAGTCTGTGGTTGTTTTCCTTTCGGTCCCTTTGGGAAGAACATCCAGTGCTGTTCTCAGCTACTGATAGGGCTCTTCCATCCATCCATCTTCCAGTTCTTCGGGCTTTGGGGCTGTAGGTGGGTGGGTGGCTCTGGTTCCCCCCTGGACGTGGGCGGAGGCGGAGCTGCGCGTGTTGGACGCGTCCTGCGTGGTCCCGCAGGTCTGTGCCTCGCGAGCACAGCGGCAGCCGGTGCCTTTTGTGTTGCTGAGTGCGCCACTCCATCCTCCGAACCGTGGGGCATCGTGTGTTAAAAGTCGTAGTTTATCAAAGCACCTTCTCTTCAGAATGTAGCAAACTGTATGTTAACGTTTTTAATGTGTTATTCTGGAGCGCGTGAACTTTTGTCTTGGAATTGTATTCGGAAATGTGGGAAATGATCCACGAGTGAATTACATGGAACAGTGAAATGTGAGCGAGGATGCTGGCAACTGAGCCCTGTGCAGATGTGTGCTCAGTATCCCCACCCTTTGTCGTGTGCTGGGCAAGGGGGTAAACTCAGAGTAAGAATACATGCTCTTCTTTTTCAGAGGAAAGATCTCTTGCTTATGGTTCTGACATTGGTTGCAGTGCCGTGAGCCATTTATGTGCTTGTTTGGAAAAGCTCTCTGAAGTTACTGTGTTCTGAAAACTTCAGTCCCCGGTGTTTGTGTGTGCCCATAAAAATGCTTATGAATTCAGAGAAATAAGCAAATATTGCGTGCTGCCCTTCTCTGCCTTGCACACATACTGAGCTGAACGCTGAGGCAGCTCTAAGATAGCTGTTTTAAGCAAAGCTGCAGAGAAACGATTTTATTTCAGCCTCTTAATTTATGAACATATCTCTGCAGCCTCTTTGCTGCTTGCATTTTTTCTCAGCACTCTTTAACTCAGCAAGTCTTAATACCAAATAGCCCACTGTCTTTCTGAGCTAACACGGTGTGTGGGGCTCTCTGTACTGTGTTGTGCAGCCAGAACTCAAACAGGAGGGTTTTCCTTCAGGCACGCCTGCAGCTAGAATGCATCTCTGGCATCAGGAGCACGGTTCTGCTTGGGGAAGAATGCACTTTTATCCCAGTTCTTGAAATGCCTGCAGGCAGGCTTGCACTCGCTGATTAGTCAGAAGGCTGTTTCATTGCTTAACAGAACAAATACAGAAGTTAAAAATTAAAAAAAAAAAAAAAAAAGACGATTAGTTCTCTGTTAGAATGCTGCTCTTGTTCTCTGGTTTGGTCTGTCTTTAGATCGTTTTATGTGATCTGTTTACTTTGAAAAAGTGGTGATAGTACGTGCCTTGCCTGTAAGAATACTTATCTCCAAAACTGACGTGAATGAATAGAAACTGCCTCCTTTGGCAAGTGCATGGGCATATGGTCGTTGTTACCAGAGTGTCCAGCCTGGGATCCTACATGGTTCTGTTCTGCAGAACTCCACTGCTGTCACAGCACTTTGTGGAGCAGTCCTGGTGGCTTCACGCAGCATTTCGCAGTGCTGGAGGCTGCACACGTGTGTCCTGCTGTAGTGCTGCTGCCTGCCGGTGGTCACGGAGGGCATGCAGGCTGCAGGGAGGAGTGCATGGAAGCCACAGAGGTAATGGTCTGTTCGTGGAGCAGTCAGTGCACATGGTGGCTTTTATTCCATGGACTCTTGGCCACTTGTGTTTCTGTTTCTTGAAATACGCTTTTTCCTTCCTTTACTCTTCCTCTGCTGTTTTAGGGGTCTTTGTTTGCTTCTGTTGTTTCTGTAAAAGAATAAGTGCACGCTACAGCTTTATACAGAAAGGGATGCTTGAATTGATGAAATTATGTAATGAGCAGAAATAGGAACTCAGCATCTTATTTTTACAGTGCTCTGTTGTGCACTCAAGTGTTAGAAACCATGTCAGTTCTTTAGGACGTCTTAACTGCTGAAGTAGTTAATTTCCCTTTTATAAACAAATCTTTTCATGTGTAATTTCTCTGTTCTGAGGCAGTCTTCTGTTACAGTAACTTCAGATCTCAGATTACCACCTGCTCCTCTGATCAAGCTGGGATCAGAGATCACTGAGATGAAGCTGAACGTGTTTCAGTTGTTCCACAAGGCCTGTAAGGGGCTGGCTGACCTGCCCAGCACAGTGCGTGCTGCCATGGGCCACGTGCTGCTCGTGTCTTTTCATAACTCAGAACCCGCTCATAACTTTGAAGATCACTTCAGCATAAAGTGTTGTTTCCTTGCCTGCAATACTCTGCATACTGATACCTGAAATGGGTGATTATCTGTATGTTCTACATGTGAAGCTGCTGGACAACTTGATCTTCCTCCTTTACCTTTGGAAAAACGGTGGCCTTTTATTGTTCAAGCTGAAATGATCCTGTCAGCCTGAGATCGGTGCTTTGGTGGTTCAGCAGCCGGAAAACATCTGCATCCAATTTCCTTGCAGGTTCTCGTGTCCACTACTGTTATTTCACGGAGCAACATGGGGAGCTGTCTGCCTAAATCTGTAACTTCCATATCTCTCCTGCAGATAACCCTTCGTGCCGTGGTGTGTTGTAAACGGTTTTGCTGAGAAACTTAGGACTTCTTCCATGGCAGAGTAGGTTGCTGCAAAACAAATGGCTGCACTGTGAATAACACCCGAAGGAGAGGAAAAATCTGCACGTCTTGCTCTGAAAAGTGGGGCTTTCAGAGGGGAAACTTTATTTGAGACTTTCGTTTCAAAGCTGCGCAGTCTTCAAAAGTCTCTTATTGCTGCAAACTGAGGGTGTGCTTTTTCAGCTTCTGAACTGCTTCATGGCTTCATTGTAGGTGGATTTATTCAAAACACATTGAATTTAATCAAACTTTGTGGGTTTTTTTTTTAAGTGAAAGTGAAACTGAATAGAAAATGAACGTCGTCTTTCTTTTTTGAGACCTTTCTGTAAATAGTGGAAGAAAAATGAGTTGTTCTATGAAATTAAGGAATTTAGGAGAAATGTGTATGCACGTAGTAAAGGAACGGAGTGATAGAAGGAATAGGAAGATGGGAATAGGAAGAAACACTTCCAGCCCTGGGCTGTCCCACAGGAGGTGGTCATTTAAGATGGCCAGTGTGATCAAACTGTGAGAACCTGGGGACCAAACTTGGTCAGAAACAAAACTAATTTATGTGGAACCAGAACTCAATGTGTGCTATTGGGAGTAATCGGTTTTCCATGAAAAAGAAAGACTTTCCGTAGTGTTTGAGAAATCAGCCTTGTGGCCTTACTTGGGCCTTCGTTTGGCAGCTGTGTATCTGTAGGATTCAAATTCCTTGCTTTTGTTGTCTGCCTTTACAGAAAACTCTTGTGCAACTTTCAGATACAGTGTTTTATCATTGTCCACGTTTGTCTGGAAATCTATTAACGGCTTGGCTTTAAACTTATTTCAGGATAGCTTCATGTGATGTATTTTCAAATCTCGCTATGTCCAAATTTCTGACCACAGATCTTAAAAATGTATATCTGAAAGCCTGTCTGTTCCTGGTGTAGCTGAAATTACATGAAGAACAATGAGCATAATGCTTTCAGCTGAGCTAAATCGTATCTGGATCTTTAGATGGCTTTGTTCAGCCGCACTCATCTTGTTGCTGTGACTCAGTTGATGGCACCCATGCTTGAAAGCCAGCAGACCTCGGCCGCTGAGCACTTCTCTCTGTTGGATACTGACGTGAAATCTTTCCTAAGCAATCAGTGCACAAACCTGACCACGTGGGAGTTAAAGTTCTTCAGTCTGATTTTTAGCCTTCTCCCCCCTCCTTAATTTGTAGTCTACTTCTGATCTGAAAGAATGGGGATGTTTATGAGTAGAGCACAACAGCTGTAGTAAGATGAGTGATGTGATGGAATAGTGATTTATGTCACAGAGGTTGAACTCTGGATGAATAACTCAGATAAGTTTCCCAATCTACAGCACTCGGATTGCTGACACCAGCTGCTAAGGGCAGAATCTGTCACCAGCACACAAGTGTCCCAGTGTTCTCCTTTGTGCTTTTCCATAAGATTGTCCCCGTTTCTTTGTCTCATTGTCCTCCCCATCTTCCTGTTTTTATTTTTCTCCTGCTTGCTTCTTTCTTCTTGCAGGGGTTTGCAGCAGCATGCTATGGTTGTGCAGCTCTGTGTGATCGAAGCATGGTGTCTAATCAGGCTCTGCAGCCCAATTCCATGCTAGGCTGGGCTGTTGGGTTTTGTTCTCTGATAATCTCTGCAAAGCAGTGGACAATGAGCTGCCAATTGAAAATTGTGACAAGAGGATTAGCAAGCATCTGTTCAAAGAGAAAGGGTTATTTTGGAAAGCAGAGAACTTTCCTGATATAGCGAAATCCTGATTGTAGAGTCCTTTACCAGCAGGATGCACCATGCCTGGCCACAGGGCTGCCTGCTGCCTCGCTGTGACGGTCTGCTTTGTAAAGCTCTCCAACACCTGACTTGATGAAGAAACTGTTAAGTTTGGTTTCACACCATTCTGTGAGTGCATGAAAGAAAGAGAAGGAAATTTTACATAGAAATGGAGTAAGGACTGTGAAACTGTTTGAAGAGTACCAACTGTATGTAAGATAAAATGTGATACCAGATGGATATGACTGTTCTCTCGTTTGAATGACTCTTGATTTTTATATCAGTCCTGAAATGCTGTTGAGTAGTGCTCACGTGTTCAGCCTGTCCTGCGTGCCTGCTCAGCACTTGCCTCTGCCGTCCCCTGTTCTTGTCTCACCGTTTCCCTCTGCAGCTCTCTGCAGTGCTTTTTTGTCTTCTGCCTCAGATACTTCAAAACTTCTTTTCATCCCACATTTCTCAATCTCAGTCTTAACCAAATACTGCATGGTTAAACTTGCTAGGAAGTTACTCCAAAATATGTGGGTTTTAAACCCACAGGTGAAATACAAGTTTAAAGGTACCAACGACAAAATATACAGAAAATTGTGTAAAGCAGATATTTTCAAGGGTGGAAGTCTGGCTAGGTTTTGTGTGCTCTGTTTCTCTCGTATTCATTATTTTTCTCCATAGAAGTGTAATTTTGTAACAGTGCTACTTTTGTATGTAATATGAGAAGGAAATGGGAAGTGCTTTACAGCTTAATGAAAACAAAGTGGAAAAGCTTTATGCAGTGCTGGAACAGGGCTCTGAATTGAGCAGGCAGCTGGGGTAGAGGCACATGCGTAACCTTGACCTTTTTTCTTGTTTCCAGTACAAGAGAAATTGCCTTCTGCACAATTGGACTCTTCAAGGAAAAGTCCTTGCTTTCGTTTTACCCTTTCCATTCCTCCCTAAACGTGCCTGTTCTTAGGAGCTGGTTTTGTTTGGAGCTGCATGATTTCTGCCTGTTTCTTCTTCAAGCCATAAGTAACTGAGGAGCAGTGCAAAAGCAAAATGTGTCTGCAGAGATTTGGAAGGATTTTACTGCATCGGGGTGTGAGAACAACAAGTCCCTTGTGGAATGTTTCCATGTGTGTCAAATTGCTTTATATTTTGTGTATATATCCCGAGGCTGGAGAAGTATGGGAGAGAAGTATTGCAGCTTATTCCTGCTCTGCATTAAAAAAAATATTCTGAAATACAGCCATTAGTCTACAAAGTGTACCATTACAAACTCAGAATAAACGCAGTTAAATCGGGCATTTAAGCAGTAGGTTAGGATGTCTGTGTTAGGACATAGGGTGGAGAAGCACCTCTCCTGAGTGCTGGCTTAGGATCTTTAACTGCCACGTGTGGTCATGGTATCAGAAGTGCCAGGAGCGAACCAAAGCAGCTGTACACCAGTAGGAGCTACAGCTGCCACTGCCTGCGGGGCTGCATGGGGCCCGGTGCCATCTACTGACTCCCAGGGTCTCTTTCTGCAGGTTTCCCTTGGGCTCCCAGCCCAGAACTAAGCCTGACCTTGTTTAGCTTGAGGTCTGAAGGTACGGGCTGATGTCACAGCTGCAATATAACAGAAAAGATTCACTTCCTATGTGCTGCTATCTGTGTAACTGCAATTTGAGCAAGAGGTCTTATTTACTTCCTGAAAAATTTGAAACTTGTTTTTCTTGTTCACATCTATCTTCACATCGGTAATTTGATTTTTAACTGCATAAAGATTGAAATATTGTGGTTGGTCTTGTTTACCAGATCTTACAGCAGAAACTTGTTACCCAAACTTCAATTACTTTTAACTTCCTTTCGTCCTGTTCTGTGGTGGTATAGGTTTCATTTTCAATTGTGTGTTATATGCCAAAGTCATCTCTGATTCTGTGCACTGAAGGTTTTTTTATGGTCTTCTCACAGAGTGTAGTGCAACACTGCAGGTTAGAAACAAAACCATAAAACGGAGATCAGGGCTTATATGCTAGTAAGCTTTAGATGCTTTCAGACATCCCAAACTTCTGAAATTCACTTGTCTTCAGTATGAAAGTAGTTTGTTTATTTATTTTTGTTTGCTTTTTGTAGAAGAGTGGTAGTATGTACAGGAAATACTGCTGTGTTTTTATCTGAAACAATATTTGTAGGTTCTGGGTACATCTTGTATCTGTTTTATTATATAATGAAAGCCTTATAAGATTGAGATCTTTAATGTTTTAGATCAACATGATGCATAAGTTTAAAACTGCATCTGTTTAAAGGGATTTATGACTAAAACTGCTTGTTTTTCTACAG
Seq C2 exon
AATTGTCTGGTGTTTCTCAGCTTGAAGAAGATCTGCAGTCATTATTGATCCTCTTTCTTGGCGTTACCATTTTCGAAGTGAAGTTTGCCTAGCTTTCTAGTGCGAGCTTTCTTTTCAGCCATCTTAAACCAAACCAAACAAACAAACAAAGATTTTGATCCGTAAAGTAGACAAGCTATAGTTCTACAATGTCCAAGTCATTCCAGCAGTCATCTCTGAGTAGGGATTCACAAGGTCATGGGCGTGAGCTCTCTGCAGGAATAGGCCTTCTTGCTGCTGCTACCCAGTCTTTAAATATGCCAGCATCTCTTGGAAGGATGAACCAGGGTACTGCACGCCTTGCTAGCTTAATGAATCTTGGAATGAGTTCTTCATTGAACCAACAAGGATCTCATAGTGCACTGTCTTCTGGTAGTACCTCTTCCCATAATTTGCAGTCTATATTTAACATTGGAAGTAGAGGTCCGCTCCCTTTGTCTTCTCAGCACCGTGGAGATGCAGACCAGGCCACTAATATTTTGGCCAGCTTTGGTCTGTCTGCTAGAGACTTAGATGAACTGAGTCGCTATCCCGAGGACAAGATTACTCCTGAAAACTTGCCTCAGATCCTTCTACAACTTAAAAGGAGGAGAGCTGAAGAAGGTTATGGTAGAGATGGCAGATCATCCACACGGGAACCACCGTACAGAGTACCTAGGGATGATTGGGAAGAAAAAAGGCATTTTAGAAGAGATAGCTTTGATGATCGTGGTCCTAGTCTCAACCCGGTAGTTGACTATGACCATGGAAGTCGTTCTCAAGAATCTGGTTATTATGACAGAATGGATTATGAAGATGACAGATTGAGAGATGGAGAAAGGTGTAGGGATGAATCTTTCTATGGTGAGACTTCGCATAACTATCATAAATTTGACAGTGAGTATGACAGAATGGGTCGTGGCCCTGGTCCCGAGAGATCTCTCTTTGAGAAAAAGAGAGGTGCTCCTCCAAATAGCAATATTGAAGACTTCCATGGATTCTTACCGAAGGGTTATCCCCATCTGTGCTCTATATGTGATATGCCAGTTCATTCTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002478:ENSGALT00000003907:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.694
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]