GgaALTD1014201-3/6 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000017611 | METTL11A
Description
alpha N-terminal protein methyltransferase 1A [Source:RefSeq peptide;Acc:NP_001264618]
Coordinates
chr17:5643632-5644592:+
Coord C1 exon
chr17:5643632-5643705
Coord A exon
chr17:5643706-5643743
Coord C2 exon
chr17:5644397-5644592
Length
38 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTTT
5' ss Score
2.06
3' ss Seq
TCCCCCCCCTTGAGGAGCAGTGA
3' ss Score
-4.21
Exon sequences
Seq C1 exon
GTCACAGCACAGCCACGCTGGGATCTGGATGCCGAGCTGAGGACCCCAAAACTGCCTCCGCTGCCATAGGAAAG
Seq A exon
GTTTTGTGTCCAACGGCGTTTCTGCCTTATTTGTAAAG
Seq C2 exon
TGAGTCCCACAAGGGTGCGTGCCCCGCAGCCAGCATGACGAGCGAGGTGGTGGAGAATGAGTTTGAGTTTTACTCCAAGGCAGAGAAGTACTGGAAGGATGTGCCCGCCACAGTGGACGGCATGCTGGGGGGCTACGGCCACATCTCCAGCATCGACATCAACAGCTCCAGGAAATTCCTGCAGCGGTTTCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017611-6-3,7-3,8-3,9-3,10-3,11-3-3/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.077
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=70.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGCTGCCATAGGAAAG
R:
CGGGCACATCCTTCCAGTACT
Band lengths:
127-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]