GgaINT1017765 @ galGal4
Intron Retention
Gene
ENSGALG00000017611 | METTL11A
Description
alpha N-terminal protein methyltransferase 1A [Source:RefSeq peptide;Acc:NP_001264618]
Coordinates
chr17:5643632-5644592:+
Coord C1 exon
chr17:5643632-5643705
Coord A exon
chr17:5643706-5644396
Coord C2 exon
chr17:5644397-5644592
Length
691 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTTG
5' ss Score
1.56
3' ss Seq
TCCCCCCCCTTGAGGAGCAGTGA
3' ss Score
-4.21
Exon sequences
Seq C1 exon
GTCACAGCACAGCCACGCTGGGATCTGGATGCCGAGCTGAGGACCCCAAAACTGCCTCCGCTGCCATAGGAAAG
Seq A exon
GTTTTGTGTCCAACGGCGTTTCTGCCTTATTTGTAAAGGTGTTTGAAGTCCTCAAATTCAGCCTTTGGCCGCCTTAAATCTCACTCCTGATCCCCGGCGCAGTTAATCACATCCACGGTGGTTTGAATTATGGGATGTCCGGGGGGGGATTTATAGCTTGTATTGCTGATTATACCTTGACTTTATTATGTGGCACATATATCTAACTGGTGGTCAGGGCTGAGATTTACAATCCTCAGGTAGGTGCTTAGGGGAACTTTTAGCAACTCCAGCTGTAATTGGAGGTGACTGATGGGGCTGTCACCGCAGATAAACACGTAAAACTTTAATGCTCTTAAGTTGGAGAGAGGAGGCAGAAAAGGTGAAAAGGCCGGGACGGCCCTCAAAGGATAAAACGGGGTATTGCTGAGCGAGAGTGAAGCTTTCCTGCCTGGGAGACTCTGGAAACACTTTGGTCCGTGTTCCTTATTCTGCTCCCCAGGAGGATGGTAGGGTTTGAAGTAGCGTTAGTAGGGGGTGATAAAGGGTTGTCAGCTTGAAGTCGGGGTGCTCACAGAGCTGATCCTCATGGCCGTGGCACTGATAAGGGGAGGGTGGTGGTGCTGTGCCCCTGGGGGGCTCGCTGGGAGCCCTGCCTGCTGGGGGAGGCTTTGTGTCTGACCTGTGATTTCTCCCCCCCCTTGAGGAGCAG
Seq C2 exon
TGAGTCCCACAAGGGTGCGTGCCCCGCAGCCAGCATGACGAGCGAGGTGGTGGAGAATGAGTTTGAGTTTTACTCCAAGGCAGAGAAGTACTGGAAGGATGTGCCCGCCACAGTGGACGGCATGCTGGGGGGCTACGGCCACATCTCCAGCATCGACATCAACAGCTCCAGGAAATTCCTGCAGCGGTTTCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017611:ENSGALT00000028312:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.077
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=70.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGCACAGCCACGC
R:
GAAACCGCTGCAGGAATTTCC
Band lengths:
265-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]