HsaINT0102166 @ hg38
Intron Retention
Gene
ENSG00000148335 | NTMT1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23373]
Coordinates
chr9:129626200-129633676:+
Coord C1 exon
chr9:129626200-129626295
Coord A exon
chr9:129626296-129632649
Coord C2 exon
chr9:129632650-129633676
Length
6354 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
ACGCCCCCTTCCTTACCCAGGAG
3' ss Score
8.63
Exon sequences
Seq C1 exon
GGCGGAGCTGCGGTTGGCTTGTGGCGTCTCCGCCGCCGCCGCCCTCCCTTCCTCTTCCCCATCTTCTTCTCTCGGTCCCGGGAGCCCCCGCCCGGA
Seq A exon
GTGAGTAGCGCGAGGCGGTGCGAAGGGTAGGCAGCCGCTGGGAGAGGGGAGGCTGCGACCCCTAACTGTTTCGGCGCCCTGAGGTCCCGGGTCCCCGGCTCGTCACGTGACCCGGCGCGTGCGCGCGGGCCGGCACAGGCCTCACGTGCGCGTCCCCAAGAGGTCTACGGGCCGGACCTGGGCAGGGACTACGGAGCAGTCCATGGGTCGGGGTACAGGAGGAAAGTCAAGGCACTCAAAGCCCAGGCAGGGCACTCCCCCACCCCGGTCCCCAGACCGCAGCAAATCCCTTTCTCTGAGCCTGTTTCCCTTCCGAGAAACAGGGATATGGAGAGCGCCCACTTGGAGGATGGATGGGAGGAATCGGTAAAATCGGTAAAATGCCCAGTTCAGAGCCTGGCACAGTTAAGTGCCCGCTGCACAGAAGTTGCTGTCGTATTTAACCTTGGGTGCCACCCGAGCGCCAGCCCGACACAGGTGCAGCTCAAAAAAGACAGCCCGAGAGCCCTTGCGGCCAAGGTCAGCCTGTCTGCAGGGAGGCTGCCATATCGAAAAGCCCAGACTTTGCTGCGCACCAACTGTGTGATCTCTCCCTCTGGACTTTGGTTTCTCCTCTGTACTATAAGTGATTGCCACAACTGGTGTCAGAGGCCCTGACAGCGGGGAGGGACAGTGTAACCGGTGGTTGTGGTGTGTAGAATGATTGCCCAGTGAGATGGGATGAGCCTCTGGGAGGAACCAGGGCTGGTATAAGGAGCCTGGATTCCCTCCTTAATTCTGTTCTCGGCTTCCTGTTTGTATGTTTAAAGACACGTCACTTCCTTTAGTGTGCTGGTTTTTCTCTATGTAAACTGAGGACTGTGCGGGGGTTGGAAGGATGCATGGAGCGTTTTGGTGGAGGCCGGAAGCCCTAGGATCACAAGGATGGCATCTAAAAAATCTCGGTGGGGGTTCTGTGCTTATAGGCAGAGGAAGCTCACTCCCCACTCTGGCTGATTTGCAGAGCTGTTTGAGTCTGCTGGCTTGGCCGCCCAGCATACCAGTAACAGTCCCCTAGGTGTGTCCAATACAGCTTCTGTGGCATTCTAAGGCAGTTTTCCCATTTGATCCTCATAGTGGGCAGAGTTGACAAGAATCTCATTTGACAGAGATTTCTAAGCTCAAGAGAGAATATGTGCCCGGCACTGTGCAAAGCACTTTAAGCTTTTCATATGCACTTTTAATCACAGCCTTTCTGTAAAGTCGGTATTACTGTTCCATTTTATAGGTGAACTGAGGAATGGTGAGGTTTAATGTCTTGTCTGTGCTTACACAGCAGGTGTGCAGAGCCAAGATTCAGATCTGGTTCATCTGGCTCCATCAGAGCCTTTGTTAGTTTTTAAATGTATCCCCTGTTTTGTCTTCTTCCCTCCCTTTCTCACTTCCTTCTTTTTCTTAGAGCACTCTGCCGTTTGCATGTGGCCTGCTGCTGTCCACAAAGATCCAGGGAGGATGGACTCTGTCCACTAGGCTGCTAGAGGGTGGAGGTAACTTTTAGGCAGGCTTTTCCGTAGAGACTTACGTGAGGAGGATGAGATGACTGCAAAAGTCTGCCGGTGACAGTTTCAGCACTGTTTTCTTCCATGGGTCGTGGGAGAAGAGATGCAGTACCTTGGGTCTGAACACCTTGGCGGGGAGGAGGAGGCAGCAGCCAGGTGACTGTGAAGGATGTAGGATCACATTTACTGGCTGAGCAGCCATTTACCAGGCATGAGGGGTTTGTCTTCCTCTCTGAGCTAGCCTAGAGTGCACACAAAGCCCGTGTGCTCCTGGCCCCCTCCCAGGCCCTTCAGCCACATACGGCATCTGTGCTCTGGAGCAGAGTGTAGCAGGACCACCTGCTGTTGGCTGACTGACCTTGCTGTTCCCTCAGACTCTTAGGGACCTCCTCCTGCCCCACTCCAATCTGGACACCACGAGGCAAAATGTAGCCAGGACCCCAGGAATCCCGTTTATTAATGAATCAGCTGTTAGGGCAGATGTCAAAGTCAGGCTTGCTATTTCCCGGCCAGGATGTGCCTCCCCTGGCTTGTTCCCAGAATTTGCGTGTAAGTGGAATTCTTGTAAATTAGATTATTCAGGGGACCCTGACATTTAAAGGAATCATGTTACAAGGCTTTTGGTAAAGCACAGAATTATATTGTCGGTAGCAGCCTTCAGGCCTTCAGTATTTACCAGTTCTGAATGGTTGGACTTTTGTCTGTAGGATTTTCTTAGAGTGGAAAATGGCTATAGCTGCACAAAGCCCATTCTTGCATTATTTGGCAACCAGTTAGTCAATGCCCACCTGGTATCAGGCACTGGGCTAATGGTGTACAAGGTAATGTCTCTACCCCCAGGAAGCTGCATGCTGGGAGAGGAGACGGATGGAGTCCAGCCTGGTATGTGTTTGCCCCCAGATTTATTCTGTTCATTTGATCAGAGGTGAACTTTCTGTTGAATATTTGTGTTTCATGGGATGCAAGAGAAGCATGGTGATAAATCTCAAATGTTGCCACTGCTCTCAGGAGCTCCCCGGCCAGGCGAGAGAGAGAACTGAATACAAAACCTTCAGTTTGCCAAGTTGGGCGGTGAGAGGGAGACAGGCTTGCTCTCGCCATGGTCCAGTCTGAATGGGAGTTGTGCCAGCATGGTGTGGAAGAGTAGTAGTTCGTTTTTTAACCTTTGTCTTTAATTTTCCCAGCCACCAAGTGTTTTTTGTTTTTTGAGACAGGGTCTCGCTCTGTTGTCCAGGCTGGACTCAAACTCCTGGGCTCAAGCAGTCTTCCCACCTCAGCCTCCCAAAGGGCTCAGGTTATAGGTTATAGGTTATAGAGTAGTTTTGAATGCCGTCCTCTCTTGAGTGACTGATGGAGGGCTGTGACATGGTTGCTCCGGTACCTGCTGGCAGAGGGGCAGGCAGCCCACCTAACCTGGTCCTTACGCCATCAGACCATAGCAGCCACCAAACCCAGCTACATGGTGACATTCAGATTGGTGGCCCTTTTTCCTGTCAGCTACCCGGGCACATCTAGCAGTCTTGAGGATTGGCAGGTCTGGTGGGAAGAAGAATTCATTCTTCTTCTTCTTTTTTTGACACAATGTCTCACTCTGTTGCCCAGGCTGGAATGCAGAGGCAGGATCATGGCTCACTGCAGCCTTGACCTCCCAGGCTCAAGTGATCCTCCCACCTCAGTCTCCCTAGTAGCTACTAGAATGTGTGTATTTTTGACAGAGATGGGGTTTCTGAGCCGTGGGCTTCTTTCTCCTTCCGGCAGTGTTGTTCCCAGTGCTGGGACACCAGTGTGGGAGCTTTGTGGTCAGCTTGCGGGGAGGGTGTTATGTGCAATATTTAGAACTAAGGTCCTCCCCAGCCTGTTACCCCAAAGGGCTCCCTGATTGGTGAAGTGACTGCTGCCTTTCTTCATTGTGGCTGAAACCCTTGTGCGTGAACAGTAAAGTGAGGGGTCAGTCTGCGAGCGGATTCAAGAATCTGAAGAGGGAAGCCAGGTGCAGTGGCGTGCGCCTGTAATCTCAGCTACTTGGGAGGCTGAGCAGGGAGGATGGCTTGAGCCCAGGAGTTTGGGGCCAGCCTGGGCCACATAGTAAGACCCCATCTCAAAAAAACAAGAATCTGAAGAGAAGTTTAAGCAGGCTTCTCTCTAGGCACAGCCAAAGGATTCTGCTAAGGGTGAGAAGACCCAATCACGGATCTAAGAAGAACCCCGTTGCATCTGTTAGAAGTATTCTTGAGCTGGCTGGGCGGGGTGGGCCTACTGCTTCTGGAAAGTTCCTTCTCTTTCAGGACAGGTTCAGAATATAGTAGTGCAGAATATAGTTCTGGGGCCAGTAACAAATTTGACCAATGAAAAATCTTGGCTGGGTGCAGTGGTTTCTGCCTGTAATCCCAACACCTTGGGAGGCTGAGGCAGGTGGATTGCTTGCAGCCAGGTGTTTGAGACCAGCCTGGGCAACGTGGCAAAACTCCATATCTACAGAAAATACAAAAGTTAGCCAGGTGTGGCGGTATGTGCCTGCAGTCCCAGCTACCCTGGAGGCTGAGATGGGAGGATCACCTGAGCTGTACTCAAGTCTGGCGACAGTGAGACCCTTTCTAAAAAAAAAGAAGAAAAAATTCTCCAGCTTGTCTTGTGTTTAGTTTCCCTTCTCTTTCCTCATAGTTGCTTCCCAAAGGCCTCGTGCTCCTTCTCAGGGCATTTTCCCGTTTCCCTCTGACCACTTCTCTTGAAGCCCCTAGAGTGTTCCTGGGTCTTAAGCTTTGAGTTGTGTTTGAGGACTGTACCCGAGTTCCATATGTGGACTCTTCCGTGTTGACCCTGTAGCTCCAGGAGTCAGGCAGACGGTCTTGGACCTACGATTTGTCAACTTTGGCGACAGGCATTTGCTAGAAGCCCCCTGCTCTCCTCGTGTGGAGGCAGCACGTGCGAGGCGGTGAGCTGCAGCTCCCAGTCAGCTGCGCGTTTTCCACCGAGGGTATTTTCCCTTTACCATGGGTTTATCAGGATGTAGCAGCTGCTGCTGCTGGGATTCCTACCACCCACTGTTGCTGTGTGTCCTCAGCACGGCCACTGCCATTCTCACTCTGCCTCCTTTAGGTTAGGCCTTGGCAGTGTGGGAAACACATCAGCCGAGAGTTGGTGCCCAGCATGCACTCGAGGCCACCCTCATCCAGGCCCCGTCTGCCTTTCCGAGCTCACCTTCCACAGTCTTCCCCCGCTCCACTCTCCGCCCTCTGATGGCCCATGCTGTCCCACGGCTGCTCCCTCTGTCTGCCCCACCCCCTCCAGCACTCCCTGTGCTTGGCTGCCCAGCTCGGGCTGCCTCCTCCAGGCGGCTGCCCCTATCTGCTGTTGGGAGGAGATTCCTCTGCCCTTTGAGTGTCCTCGACACTTTGTGGGTCCATGAGAATCCTTATTTTTCTGCTGTGTATTTTCTTTCCCTTTGTTCTTTGTCCTCCTGGACTAGAGCTCTCTGAGGTCTTGGCAAGCCTCACAGCAACTAGAACAGCCCCTAAGCGTGGTGTGCCTTGGTGACAGCACTGTGCCTTGGGAAGCTTATGGCAGAATGGCCACCCGTGGAGCACGGAGCCGCCCAACTGTCATCGCTGTCCTGAAGGGTGAGGTGGGCCTGGGCTCTGCTGCCAGGACCCAGCTGAGGCTTTCTAGTTCTCTCTCCTTCTACCGTGGCAACCGTCTCCTCATCCCCCTGCCATCTCCACCGCCGCCAGCAGTCTTCAGAAGCATCGGTCTTCCCGGGCCACTCTCTGTTGGGCCTCAGGGTGGTTGACTCATTGCTCTGTAGGATGCAGTCGAAACTGCTAGAGTTGACTGTGAGACCAGGAACTGGCAGCCGCGAGGGCTGTCTGTCCTTCCCTCCAGGAGCAGTGCCGTCGCCCTCCACCTACTGCGCTTATTCTTGCCCATCCATCGGTTTCAGCTTACGCGTCCCCTCCTCAGGGATGCCTTCCCTGGTCCCCGCACCCGACTCCACTTCCTCCCTCCGTGCTCTGCTGGCACTGGCGCTTCTCCTCTGCAGCCCTCCCTGCAGGTGTGGTTGTGTCTGTAGAATTGTTTTCTGCCTGGCTGGCTGCCTGGTTCACAGCCCGGTGCCTGGCACAGAGTCCCCACTCCTTGTTAACGGAGGACTGGACCCCACCGTGAGTTGTTGCTGTGCTCTGAGCCAGAGGAAGGGAGGCGTGGAAGCTTCCCTGGCCCTCCAGGGTCTGCTGGTGCTCTCGGCTTTGCGGTCGTTTCTCTTTATTGATCAGGGTTTTCTGTGCCCTGAAGCCACTGAGTCAGGTGTCATATAGAGCATATCAAGAACTTGAAGCCAGGCCAGGCACATGGGCTCACACCCGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGAATCTCTTGAGGTCAGGACTTCAAGACCAACCTTTGTAACATAGTGAGACCCCATCTCTACAAAAAATAATTAGCCAGGCATGGTGGCACACAACTGTAGTCCTAGCTGCTCCGGAGGGTGAGGTGGGAGGGTCTCTTGAGCTCGGGAGTTGGAGGCTGCATTGAGCTATGATCACACCACTGCACTCCAGAAAAAATAAAAATGTAAAAGAACTTGAAGCCAGGACTTGGGGCGGGTGCTCTGAGTGCAAAAGACAGAAGATGCTGTTATCCAAGGGGTAGAAGCAGATTTGGGGACCCTGGACTTCTCTCTGCACTCAGCAGGATGTGTGACTTGTGAAGCCTGGTGTGAGACTGGCCCTCTGCCCTGGGGGCCTTTCTGCCAGGTCCCTGGCCCGCTGACTCACGCCCCCTTCCTTACCCAG
Seq C2 exon
GAGAGTCGCGGTTGCTGATCGTGGTGCTTGAGTAGAGCCGTGGTTGGTGACAGCATGACGAGCGAGGTGATAGAAGACGAGAAGCAATTCTATTCCAAGGCCAAGACCTACTGGAAACAAATCCCACCCACGGTGGACGGCATGCTTGGGGGGTATGGCCACATCTCCAGCATCGACATCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTGAGGGTAGGCAGGTCTGGCGTGCTCTCCAGGAGAGGCTGTGGCTCTGGTGGCACTGCCGAGTCCATGTGGGGTGCCACCTTTTACACATGTAACACTGCAGGATTGTTGGCTATCTCTTGGTACCTACCCCAAAGCCTTGAGGAGCTGGGCTGGGTGGGCACAGTGGGGTAACTTCTAGATTGTGGACTTAGCCTCAGGGTTACCAGACAGGAGCTGGCTGTTAGGCAGAATTGAGGTGCCTGAATTGGGCAAACCTCTCTTCAACTGTTGGGTTTTGCCAGGGACGAAACCCTTGCTCTCCTGCCATGTCCACGGGTGTTTGGACTGAGGGTGTTGGCTATTCTGGACGAAGACTCCTAGTTATGTGCCATGGTTTCCACCCTCTGCTCCACCCCCAGCCTTTTCTGTACCAGGCTGGGACCCCCAGTCCTGGAGCCCCCCACCTTCTTGTCTCATGGCTGGCACTGGAGGCTGCTGTTGGCCACCTGCTCCATCCAGCGCCTCCCCTCCCTCCATGTTCCCTCTCTGCACCCTTGTTCACCTGTTGCCCCGCTTCCATTCTCCCCATTCCTCTCTGCCGTTGTTTACCTGGAGACTCAGGAGAGATTAGTGCACCTGTTCAAGTTATCACCTTTAAGTGGAAATTAGCTTTCATTTAGAAATGTGTGGCCCAGGGCAGGGGCAGTGGCTCACTCCTGTCATCCCAGCCCCTTGGGATGCCAAGGTGAGAGGATTGCTTGAGCCCAGGAGTTTGAGACCAGCCTGGGCAACAGACCGAGGCCCCGTCTCTACAAAAAATACAAAAAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148335:ENST00000459968:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.031
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development