BtaINT0104229 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015437 | NTMT1
Description
N-terminal Xaa-Pro-Lys N-methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23373]
Coordinates
chr11:100042202-100047789:+
Coord C1 exon
chr11:100042202-100042349
Coord A exon
chr11:100042350-100047575
Coord C2 exon
chr11:100047576-100047789
Length
5226 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CACTTTCCTTTCCTTCTCAGGAA
3' ss Score
10.94
Exon sequences
Seq C1 exon
GGGCAAAAGCGGCGCGCGCCGCGAGGTGTCGCTTCCAGCCAAGGTTGGACGGAGCTGGTCGTGGGCAGGTGGGGGCTCTTCGGCCCTGCCGCCCCTCTTTTCCGCTTCCCCGTCCTCTTCTCCCGCGTCCCGGGAGCCCCCACCCGGG
Seq A exon
GTGAGTAGCGCGAGGCGGAGCGGGGTGGGGGGCGGAGACAGCGGCCGCCGGGAGAGGGGAGGCCCCGGACCCCAACCGCCTGGGTCGCCTGAAGCCTCCCCGGCTCTTCACGTGACCCGAGCGCGAGCGGGCTCGGCCCCACGTGCGCGCTCGCGGAAGGTCCGCCGGCCGGCCCTGGGCCCCCGGGGTCCCGGGGTGGAGGAAGGCTGAGACCCCGCAAGCCTGATCAGGGCACTGCCCCCACGCCGAACCCCGCCGCCTCAAGTTCCTTTCCCTGTCTGAGCCTCAGTTTCCCCTCTGCCAGACGGGTAAGGCGCGCACCCTCAAAGGAGGGTGGGTGTGAGGATTCAGGAAGAGCGCTCGGATCACAGTCGGGCACAGGGTATCGTGCTCGTTACCCAGGCGCCGCTCTCATATTTCACCTTGGACCCGACCCCAGTGACGGCTCAACAGAGGTGCTATTTCAAAAGACAGCCCGCCGGCCCCCCGAGCCCTTGGAGCCAAGGTCAGCCTGTTGGCAGAGAGGCTGCCATAAATCTGAAGGCCCAGGCTCTGCTGCCCAGTCATCTGCGACCTCTCTCTGGATCTGGTGCGTCTGTAAGACAAGGATTAGAAACAACTGGTGTCAGAGGCCCTGCCGGTGGGGCCGGGCTGTACTGCACATGGTCTGGATGTAGAGTCTGCTCAGTGAGATGGCCTGAGCCCCTGGGAGAAAGGGGACCTTGAGCGGGGTCAGAAGTCTGGATTCTGTCCTTGTTCTGTTCCTGGTTTCCTGTGTGTGTGCATTGCTCCATTTTAGTGAATGGTTTTTCTGTGTGTACCAGAGACTATGGGAGGGTTGGAAGTAAATACATGTGGCATGCTTTGGTGGCGACCAGAAGCCCTGGAGTCACCAAAACCTTGGGGGTTTCTGTGCCTGCGTGGCTGGAGGCTCGCTCCCCTCTGCTGCCATTGGCAGAGTCATTTGAGTGACTGGATTGACCACCCTGAAGTAGCAGTGATAATCCCTTAGGTGTGACCAACACGCCACAGTTTATAGGGCCTTTCAGCACATTTTCTCATTAGATCTTCACATTTAGCAGAGAGAATTGATGAGCATCTCATTGGACAGAGGGTGTTTTTTTTTTTTTAAGATTAATATGTGCCCAGCAGTGTCTGGATCACTTTTCACTTTTATATCCACATTTAATCATCACAGCCCTCCTGTAAAGTCAATATTGTTCCCGTTTTATAGATAAAGACAGCCAGTTAACTGAGGTTGTGTCTTATCTGAGCTTACACAGCCAGTGAGAGGAGAGCCAGTGTTCGGACCTGGTTCATTCACCATCAGAGTTTAATCCCCTCCCCTCTTCCTTGCTTCTTCCTTGTTCCCTCCGTTACGACATGATTCCTTTAAATGTCAAGGTCCCCTGAATAATCTCATTTACAAGAATTCCACTTACAGGCAGGGACAGTTCAGACACCATTCTCTGTCATGGATCCTGGAAGAAGAGTAGTTGCTGGGGTGGCTGCCCAGGGTCGCCCTAAACACCTTGGGGTGGGGAGATGACCATGAAGGATGCCCAGACACATTCCACTCTGAGAAGCAGAAGTTCCATAATGAGCAAAGGGTCTCTTCTCCTCCGAGCTCATTTAGAGCACTCACGAAACCAGACTGTGTCCAGGCCCCTTCGCATCCCTGCAGCCACGTGGCTCCTTCCTATGATCTGGACTGAGTGTAGGAGGACTTCTTGGAGTTTGATCAATAACACTGCTGTCCCCACTGACTCCTAGGGACCTCCTGTCCACCCCAGTCTGGATGCCAGGAGGTACAGTGTAGACAGGGCCCCAGAAGTCATGTTTACTAATGAATCTAAGCTGTTAGAATAAATGTCAAAGTCACCCTTGCCATTTCCCAGGCTGGATGTGCCTCCCTGGCTTATTCCCAGACTCTGCCTGTAAGTGGAATTCTTGTCAATGAGATTATTCAGGGGACCTTGACATTTAAAGGAATCATGTTGTACGGCTTTTGGTAAAGCAAAAAATTATACTGTCAGTAAAGGGCTTCAGTGTTATCAGATTGGAACGGTTACATCTTTGTAGGATTTTCTGAAAAGTACAGAATGGCTGTAGCCGCACAAAGGTCCTTCTTTGATTCTTGAGCAACCAGTTAGTAAATTGCCCCCTTGTATCAGGTCTGAGGCTAATGGTGTGTGAGGCAGTGTCCCTGCGCCCAGGAGCCTTGTCTGCTGGGAGGAAGGGCAAACAACAGGCAGAGGGAGAGAGTGCACCCCGGGGGCGTCTGGCCCACAATTATTCTGTTCATTTGATCGGCAGGGAATTTTGTTGAATACCTATGAGCTGTGTGGAATGCAAGAGAAATACAATGATACATTCCAGGATGTCGCCACTGCTTTCTCAGGCAGTTCCCAGTCCTGTGGGGAGAGAGAGACAAGCACAGAACCGGAAGTGTATCTGAGGGGGACAGGGTCGAACCACCTGCAGTTTGTCTGCGGGGGAGCAAGCTGTGTGGTGTGGAAGAGCTGGCTTTGGCGCGGTCCTTCCTGGGTGGCGGTCAGGGCCCGGTGGGACGCTGTGACAGAGTTGCCGTGGCCCCTGTTGCCAGGGCCGGGGAGCCCACTTGGCCTTGCCGACCCCACCCACATAAGCCACCCCCAAACCCAGTCAAGTTACATGGTGATGTTCAAGCTGGCGGCCCCCCCCGTCAGTTGCCAGGGAGCCACTGCCGCAGCTAGTGTGCTTGGGGACTGGGGGGTCTCTGCATCCTTTCGCTTCGCGTGTCCCTCAGGGTTGGGGGGACAAGAGCCCATTCTCACAAGCAGCATGCGACGTCCTCGTTCTGATTGGGCGGGGGGGTAGTAGCTTCAGGGGTTGGGACACGGGTGTGGGACACTGCCATGATTGGGGTGGGTGGACAGTATTTGGAACCCAGGCCCCCCCAGCCTGTTACCCCAGAGGGCTCTTGGGTGGGTACAGTAACTGGAGCCAAAGTCACCGCGGTCCCAGGCCCTGCGCCTGCCCAGGAAGCGGGGGATCTGTCTGAGAGCTGACTCAGGAGCCCGTGGAAGGACTGGAGCAGGGGCCTCCAGGAGCAGAAGGGGCCTCCGAGGGTGGGACTTTGGCCAACCCGGTTGTGCTAGTAGATCTCTCGGCCCTCCTCTGTTCCTCGGAAGGCCAGCGTGTGAGAAAGCCTGGATCCGTGGAGGAGGAGCCCCCTGCCCAGCAGCTCTCACCTGCCAGGCCGGGCCCTCCCTGGTGACCGCACTCGCTGGTGGGGTCTCTGGAAGGGGCTGGCCATGGCAGAAGTGGGACTGCATCGAGGAGCCGTGTCTCTGAGTTGTTTGTGCGGGGCACGCCTGCTGCTTCTGGAAGGTTCCTTCTGGGACAAGTTCAGAATACAGGTGTTGGGTTGGAGGCTGGCGACAGACACGGGAGTGAAAGATCTTCAGCACGCCTCATGTTTTGTCTCCCTTCCCTCCTCCTAGTCTCCAGGCTGCGTCCTGAAGGCCCGTGCTGTCCGCAGGGCACTTTCCCATTACTTCCCTTGAGGCATTCCTTGGTCTTAGGGGGTTCTCAGCTCTTTTGCAGGACTGTACCGGCTGGGTGGGGTGGGCTTAACTTCAGCCCCGTGGAGTTCTGTAAAGGGGGCAGAGTGAAGCCCCCGGAGCTCAGAGGCGCACAGCTTTCCTGTAGGACGGGGGCGGGGGGTGCTGCCACCCCTGCACCGAGTGACCCGTGTGCCCTCGCAGGCCAGATGGTCAGTCAACAGCTCATTTCAGAAAGAAACACACGCTCTGAAGGCAGCAGCCGTGGGGCGTGGGTAAGGACGTGGGAGGAAGGCACCTCGGCGGGTCAGGGCAGGCCTCTGGGGGGAGATGGCACTCAAGCTGCGACGCTGAGGTGACAATGAGCTGCCCACGCGGGGGGGCTAGGGCCTGGCAGGTGCACGGGCCTCCTGGCCTAGGGTAGGGACCCTGACCTGGCCCCGCCTTCCCACGCTGCCCCCGCTCCGTCCCCAGGATGGGTCCCCGCACACCCTCACCCTTCAGAAACTCACCCGATCGCTTCCCCGTTGGTGACACATGGCAGCCAGCCGGGCCAGCCCTCTGTGTGGCATGCACGCCACGCCGTCTCTGCTCTGCCCCTGTCACCATCCAGAGTGTTCCTTGTTCTCAGGGCCCGGCTCAGGGCTTGCCTTCTCTCAGCTGCTGCCCCACCTGCCACTCGGAAGGGACTTCTTCATCCCTCGAGTTCCCATAGCACTTTCTGTCTCAGCGAGAGGCCTCGTTTCTGCCTTGTGTTTGCACTGGTTCCATTCGGGGAGCGGGCTGTATCTGGACCAGCCCTGTGCACGGAGAGCATCTGTAGACCAGTGTTGTCCATGGGGAGAGGTGACCCTCCCTGCCCCGTGTGGCGCAGCCCAGCTGGCGGGTGTGGGGCGCTGTGGGCCTCTGTTCTGCTCTGGGGGCCTGGCCATCTGCTGGTCCTCTCACCCGGGAGTCCATTCAGCTGCCAGCACCGCCTTCTGGAATCTCACGTCTCAGGCCACTTCCTGCTTAACCCGGAGTAGTTGCAGCTCGCTGCCCTTCGGGGTGAAGGCTGAGTTGGCAGCCGTGACCTAGAGGACCCCGAGCTTCCCCTTGGAGGAGCCCCTTGCCCTCGCGTCTTCCCAGTCGCTGTGCGAATGTGTCCTCCTCCCTGGTGTCGGCTGCTGTGTCACGTCTCCTGGCGCCCGTCGTCTGCCCGCCCCTGTGCCCCTCTGTGGCCCTCACGCACGGTGGTGTGTGTCCGCCTGCCTCTCTCCCTGTTCGCAGCACTGCACCCCGTGGCGAGCCTGTCCACGTGCTCATGACCGAAGCTGGGAGGCGGGGTCCTCGGGGTCCCAGAGAGGAGGCTTCAGTTCCGTGCTTTGCTCTTCTTTAACTGTAGATCGGGATCCTGTCTACCGTGGGGTCAGAAGCCGCCAGGTCAGGTGTCTTGTCGGGAAAGGAAAGATGGAGAAGCCAGGACGCTGGGTCTCCTGCTCTGACATGAAGATAGCTTTGTGAAATGACTTGAATACGGCTCTTGTCAGGAGGCACTGCCCTCCGAGGGGTAGGAGCGGGCGGGGGTTGGAGGGGGCAGCCACTCCTCGGCATCAGACAGGATCGTGTGACCAGGAGCAGCCATGCCAGGAGACTGGGGCCCGAAACCTGGCTGCTTCACCCACTTTCCTTTCCTTCTCAG
Seq C2 exon
GAACCACCAGTGCTGAGTTTGGTGCCTGGGCAGAGACGCGGCTGCTGACAGCATGACGAGCGAGGTGATCGAGGACGAGAAGCAGTTCTACTCCAAGGCCAAGACGTACTGGAAGGAGGTCCCTGCCACCGTGGACGGCATGCTCGGGGGGTATGGCCACATCTCCAGCATCGACATCAACAGCTCCCGGAAGTTCCTGCAGAGGTTTCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015437:ENSBTAT00000020514:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development