HsaINT0102166 @ hg19
Intron Retention
Gene
ENSG00000148335 | METTL11A
Description
methyltransferase like 11A [Source:HGNC Symbol;Acc:23373]
Coordinates
chr9:132388435-132395144:+
Coord C1 exon
chr9:132388435-132388574
Coord A exon
chr9:132388575-132394928
Coord C2 exon
chr9:132394929-132395144
Length
6354 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
ACGCCCCCTTCCTTACCCAGGAG
3' ss Score
8.63
Exon sequences
Seq C1 exon
CAAAGGCAGCGCGCGCCGCGAGCTGTCGCGTCTGGTCGTGGTCTGGCGGAGCTGCGGTTGGCTTGTGGCGTCTCCGCCGCCGCCGCCCTCCCTTCCTCTTCCCCATCTTCTTCTCTCGGTCCCGGGAGCCCCCGCCCGGA
Seq A exon
GTGAGTAGCGCGAGGCGGTGCGAAGGGTAGGCAGCCGCTGGGAGAGGGGAGGCTGCGACCCCTAACTGTTTCGGCGCCCTGAGGTCCCGGGTCCCCGGCTCGTCACGTGACCCGGCGCGTGCGCGCGGGCCGGCACAGGCCTCACGTGCGCGTCCCCAAGAGGTCTACGGGCCGGACCTGGGCAGGGACTACGGAGCAGTCCATGGGTCGGGGTACAGGAGGAAAGTCAAGGCACTCAAAGCCCAGGCAGGGCACTCCCCCACCCCGGTCCCCAGACCGCAGCAAATCCCTTTCTCTGAGCCTGTTTCCCTTCCGAGAAACAGGGATATGGAGAGCGCCCACTTGGAGGATGGATGGGAGGAATCGGTAAAATCGGTAAAATGCCCAGTTCAGAGCCTGGCACAGTTAAGTGCCCGCTGCACAGAAGTTGCTGTCGTATTTAACCTTGGGTGCCACCCGAGCGCCAGCCCGACACAGGTGCAGCTCAAAAAAGACAGCCCGAGAGCCCTTGCGGCCAAGGTCAGCCTGTCTGCAGGGAGGCTGCCATATCGAAAAGCCCAGACTTTGCTGCGCACCAACTGTGTGATCTCTCCCTCTGGACTTTGGTTTCTCCTCTGTACTATAAGTGATTGCCACAACTGGTGTCAGAGGCCCTGACAGCGGGGAGGGACAGTGTAACCGGTGGTTGTGGTGTGTAGAATGATTGCCCAGTGAGATGGGATGAGCCTCTGGGAGGAACCAGGGCTGGTATAAGGAGCCTGGATTCCCTCCTTAATTCTGTTCTCGGCTTCCTGTTTGTATGTTTAAAGACACGTCACTTCCTTTAGTGTGCTGGTTTTTCTCTATGTAAACTGAGGACTGTGCGGGGGTTGGAAGGATGCATGGAGCGTTTTGGTGGAGGCCGGAAGCCCTAGGATCACAAGGATGGCATCTAAAAAATCTCGGTGGGGGTTCTGTGCTTATAGGCAGAGGAAGCTCACTCCCCACTCTGGCTGATTTGCAGAGCTGTTTGAGTCTGCTGGCTTGGCCGCCCAGCATACCAGTAACAGTCCCCTAGGTGTGTCCAATACAGCTTCTGTGGCATTCTAAGGCAGTTTTCCCATTTGATCCTCATAGTGGGCAGAGTTGACAAGAATCTCATTTGACAGAGATTTCTAAGCTCAAGAGAGAATATGTGCCCGGCACTGTGCAAAGCACTTTAAGCTTTTCATATGCACTTTTAATCACAGCCTTTCTGTAAAGTCGGTATTACTGTTCCATTTTATAGGTGAACTGAGGAATGGTGAGGTTTAATGTCTTGTCTGTGCTTACACAGCAGGTGTGCAGAGCCAAGATTCAGATCTGGTTCATCTGGCTCCATCAGAGCCTTTGTTAGTTTTTAAATGTATCCCCTGTTTTGTCTTCTTCCCTCCCTTTCTCACTTCCTTCTTTTTCTTAGAGCACTCTGCCGTTTGCATGTGGCCTGCTGCTGTCCACAAAGATCCAGGGAGGATGGACTCTGTCCACTAGGCTGCTAGAGGGTGGAGGTAACTTTTAGGCAGGCTTTTCCGTAGAGACTTACGTGAGGAGGATGAGATGACTGCAAAAGTCTGCCGGTGACAGTTTCAGCACTGTTTTCTTCCATGGGTCGTGGGAGAAGAGATGCAGTACCTTGGGTCTGAACACCTTGGCGGGGAGGAGGAGGCAGCAGCCAGGTGACTGTGAAGGATGTAGGATCACATTTACTGGCTGAGCAGCCATTTACCAGGCATGAGGGGTTTGTCTTCCTCTCTGAGCTAGCCTAGAGTGCACACAAAGCCCGTGTGCTCCTGGCCCCCTCCCAGGCCCTTCAGCCACATACGGCATCTGTGCTCTGGAGCAGAGTGTAGCAGGACCACCTGCTGTTGGCTGACTGACCTTGCTGTTCCCTCAGACTCTTAGGGACCTCCTCCTGCCCCACTCCAATCTGGACACCACGAGGCAAAATGTAGCCAGGACCCCAGGAATCCCGTTTATTAATGAATCAGCTGTTAGGGCAGATGTCAAAGTCAGGCTTGCTATTTCCCGGCCAGGATGTGCCTCCCCTGGCTTGTTCCCAGAATTTGCGTGTAAGTGGAATTCTTGTAAATTAGATTATTCAGGGGACCCTGACATTTAAAGGAATCATGTTACAAGGCTTTTGGTAAAGCACAGAATTATATTGTCGGTAGCAGCCTTCAGGCCTTCAGTATTTACCAGTTCTGAATGGTTGGACTTTTGTCTGTAGGATTTTCTTAGAGTGGAAAATGGCTATAGCTGCACAAAGCCCATTCTTGCATTATTTGGCAACCAGTTAGTCAATGCCCACCTGGTATCAGGCACTGGGCTAATGGTGTACAAGGTAATGTCTCTACCCCCAGGAAGCTGCATGCTGGGAGAGGAGACGGATGGAGTCCAGCCTGGTATGTGTTTGCCCCCAGATTTATTCTGTTCATTTGATCAGAGGTGAACTTTCTGTTGAATATTTGTGTTTCATGGGATGCAAGAGAAGCATGGTGATAAATCTCAAATGTTGCCACTGCTCTCAGGAGCTCCCCGGCCAGGCGAGAGAGAGAACTGAATACAAAACCTTCAGTTTGCCAAGTTGGGCGGTGAGAGGGAGACAGGCTTGCTCTCGCCATGGTCCAGTCTGAATGGGAGTTGTGCCAGCATGGTGTGGAAGAGTAGTAGTTCGTTTTTTAACCTTTGTCTTTAATTTTCCCAGCCACCAAGTGTTTTTTGTTTTTTGAGACAGGGTCTCGCTCTGTTGTCCAGGCTGGACTCAAACTCCTGGGCTCAAGCAGTCTTCCCACCTCAGCCTCCCAAAGGGCTCAGGTTATAGGTTATAGGTTATAGAGTAGTTTTGAATGCCGTCCTCTCTTGAGTGACTGATGGAGGGCTGTGACATGGTTGCTCCGGTACCTGCTGGCAGAGGGGCAGGCAGCCCACCTAACCTGGTCCTTACGCCATCAGACCATAGCAGCCACCAAACCCAGCTACATGGTGACATTCAGATTGGTGGCCCTTTTTCCTGTCAGCTACCCGGGCACATCTAGCAGTCTTGAGGATTGGCAGGTCTGGTGGGAAGAAGAATTCATTCTTCTTCTTCTTTTTTTGACACAATGTCTCACTCTGTTGCCCAGGCTGGAATGCAGAGGCAGGATCATGGCTCACTGCAGCCTTGACCTCCCAGGCTCAAGTGATCCTCCCACCTCAGTCTCCCTAGTAGCTACTAGAATGTGTGTATTTTTGACAGAGATGGGGTTTCTGAGCCGTGGGCTTCTTTCTCCTTCCGGCAGTGTTGTTCCCAGTGCTGGGACACCAGTGTGGGAGCTTTGTGGTCAGCTTGCGGGGAGGGTGTTATGTGCAATATTTAGAACTAAGGTCCTCCCCAGCCTGTTACCCCAAAGGGCTCCCTGATTGGTGAAGTGACTGCTGCCTTTCTTCATTGTGGCTGAAACCCTTGTGCGTGAACAGTAAAGTGAGGGGTCAGTCTGCGAGCGGATTCAAGAATCTGAAGAGGGAAGCCAGGTGCAGTGGCGTGCGCCTGTAATCTCAGCTACTTGGGAGGCTGAGCAGGGAGGATGGCTTGAGCCCAGGAGTTTGGGGCCAGCCTGGGCCACATAGTAAGACCCCATCTCAAAAAAACAAGAATCTGAAGAGAAGTTTAAGCAGGCTTCTCTCTAGGCACAGCCAAAGGATTCTGCTAAGGGTGAGAAGACCCAATCACGGATCTAAGAAGAACCCCGTTGCATCTGTTAGAAGTATTCTTGAGCTGGCTGGGCGGGGTGGGCCTACTGCTTCTGGAAAGTTCCTTCTCTTTCAGGACAGGTTCAGAATATAGTAGTGCAGAATATAGTTCTGGGGCCAGTAACAAATTTGACCAATGAAAAATCTTGGCTGGGTGCAGTGGTTTCTGCCTGTAATCCCAACACCTTGGGAGGCTGAGGCAGGTGGATTGCTTGCAGCCAGGTGTTTGAGACCAGCCTGGGCAACGTGGCAAAACTCCATATCTACAGAAAATACAAAAGTTAGCCAGGTGTGGCGGTATGTGCCTGCAGTCCCAGCTACCCTGGAGGCTGAGATGGGAGGATCACCTGAGCTGTACTCAAGTCTGGCGACAGTGAGACCCTTTCTAAAAAAAAAGAAGAAAAAATTCTCCAGCTTGTCTTGTGTTTAGTTTCCCTTCTCTTTCCTCATAGTTGCTTCCCAAAGGCCTCGTGCTCCTTCTCAGGGCATTTTCCCGTTTCCCTCTGACCACTTCTCTTGAAGCCCCTAGAGTGTTCCTGGGTCTTAAGCTTTGAGTTGTGTTTGAGGACTGTACCCGAGTTCCATATGTGGACTCTTCCGTGTTGACCCTGTAGCTCCAGGAGTCAGGCAGACGGTCTTGGACCTACGATTTGTCAACTTTGGCGACAGGCATTTGCTAGAAGCCCCCTGCTCTCCTCGTGTGGAGGCAGCACGTGCGAGGCGGTGAGCTGCAGCTCCCAGTCAGCTGCGCGTTTTCCACCGAGGGTATTTTCCCTTTACCATGGGTTTATCAGGATGTAGCAGCTGCTGCTGCTGGGATTCCTACCACCCACTGTTGCTGTGTGTCCTCAGCACGGCCACTGCCATTCTCACTCTGCCTCCTTTAGGTTAGGCCTTGGCAGTGTGGGAAACACATCAGCCGAGAGTTGGTGCCCAGCATGCACTCGAGGCCACCCTCATCCAGGCCCCGTCTGCCTTTCCGAGCTCACCTTCCACAGTCTTCCCCCGCTCCACTCTCCGCCCTCTGATGGCCCATGCTGTCCCACGGCTGCTCCCTCTGTCTGCCCCACCCCCTCCAGCACTCCCTGTGCTTGGCTGCCCAGCTCGGGCTGCCTCCTCCAGGCGGCTGCCCCTATCTGCTGTTGGGAGGAGATTCCTCTGCCCTTTGAGTGTCCTCGACACTTTGTGGGTCCATGAGAATCCTTATTTTTCTGCTGTGTATTTTCTTTCCCTTTGTTCTTTGTCCTCCTGGACTAGAGCTCTCTGAGGTCTTGGCAAGCCTCACAGCAACTAGAACAGCCCCTAAGCGTGGTGTGCCTTGGTGACAGCACTGTGCCTTGGGAAGCTTATGGCAGAATGGCCACCCGTGGAGCACGGAGCCGCCCAACTGTCATCGCTGTCCTGAAGGGTGAGGTGGGCCTGGGCTCTGCTGCCAGGACCCAGCTGAGGCTTTCTAGTTCTCTCTCCTTCTACCGTGGCAACCGTCTCCTCATCCCCCTGCCATCTCCACCGCCGCCAGCAGTCTTCAGAAGCATCGGTCTTCCCGGGCCACTCTCTGTTGGGCCTCAGGGTGGTTGACTCATTGCTCTGTAGGATGCAGTCGAAACTGCTAGAGTTGACTGTGAGACCAGGAACTGGCAGCCGCGAGGGCTGTCTGTCCTTCCCTCCAGGAGCAGTGCCGTCGCCCTCCACCTACTGCGCTTATTCTTGCCCATCCATCGGTTTCAGCTTACGCGTCCCCTCCTCAGGGATGCCTTCCCTGGTCCCCGCACCCGACTCCACTTCCTCCCTCCGTGCTCTGCTGGCACTGGCGCTTCTCCTCTGCAGCCCTCCCTGCAGGTGTGGTTGTGTCTGTAGAATTGTTTTCTGCCTGGCTGGCTGCCTGGTTCACAGCCCGGTGCCTGGCACAGAGTCCCCACTCCTTGTTAACGGAGGACTGGACCCCACCGTGAGTTGTTGCTGTGCTCTGAGCCAGAGGAAGGGAGGCGTGGAAGCTTCCCTGGCCCTCCAGGGTCTGCTGGTGCTCTCGGCTTTGCGGTCGTTTCTCTTTATTGATCAGGGTTTTCTGTGCCCTGAAGCCACTGAGTCAGGTGTCATATAGAGCATATCAAGAACTTGAAGCCAGGCCAGGCACATGGGCTCACACCCGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGAGAATCTCTTGAGGTCAGGACTTCAAGACCAACCTTTGTAACATAGTGAGACCCCATCTCTACAAAAAATAATTAGCCAGGCATGGTGGCACACAACTGTAGTCCTAGCTGCTCCGGAGGGTGAGGTGGGAGGGTCTCTTGAGCTCGGGAGTTGGAGGCTGCATTGAGCTATGATCACACCACTGCACTCCAGAAAAAATAAAAATGTAAAAGAACTTGAAGCCAGGACTTGGGGCGGGTGCTCTGAGTGCAAAAGACAGAAGATGCTGTTATCCAAGGGGTAGAAGCAGATTTGGGGACCCTGGACTTCTCTCTGCACTCAGCAGGATGTGTGACTTGTGAAGCCTGGTGTGAGACTGGCCCTCTGCCCTGGGGGCCTTTCTGCCAGGTCCCTGGCCCGCTGACTCACGCCCCCTTCCTTACCCAG
Seq C2 exon
GAGAGTCGCGGTTGCTGATCGTGGTGCTTGAGTAGAGCCGTGGTTGGTGACAGCATGACGAGCGAGGTGATAGAAGACGAGAAGCAATTCTATTCCAAGGCCAAGACCTACTGGAAACAAATCCCACCCACGGTGGACGGCATGCTTGGGGGGTATGGCCACATCTCCAGCATCGACATCAACAGCTCCCGGAAGTTTCTGCAGAGGTTTTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148335-METTL11A:NM_014064:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF058917=Methyltransf_PK=PU(21.3=85.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)