GgaALTD1014768-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000002722 | MST1
Description
hepatocyte growth factor-like protein precursor [Source:RefSeq peptide;Acc:NP_990544]
Coordinates
chr12:2481134-2481497:+
Coord C1 exon
chr12:2481134-2481284
Coord A exon
chr12:2481285-2481296
Coord C2 exon
chr12:2481367-2481497
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGG
5' ss Score
3.87
3' ss Seq
CCACGTGGCCCCTCCGCCAGGGA
3' ss Score
5.12
Exon sequences
Seq C1 exon
AGAAACGCCCGCGGCCCATCAACGTCACCACCGGCTGCTACAGGGGCAAGGGCGAAGGCTACCGGGGCCGGGTGAACGTCACCGTGTCGGGCATCCCCTGCCAGCGCTGGGACGCGCAGACACCCCACCGGCACCACTTCGTGCCCAGCAA
Seq A exon
GTACCCCTGCAA
Seq C2 exon
GGACCTGCAGGAGAACTACTGCCGCAACCCCGATGGCTCAGAGGCCCCGTGGTGCTTCACCACCCGCCCCGGCATGCGCGTCGCCTTCTGCTTCCACATCCGTCGCTGTGACGACGAGCTGGACGCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002722-9-11,10-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=76.4)
A:
NA
C2:
PF0005113=Kringle=PD(45.6=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACTTCGTGCCCAGC
R:
GACGGATGTGGAAGCAGAAGG
Band lengths:
124-136
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]