RnoALTD0018804-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116859740-116860188:+
Coord C1 exon
chr8:116859740-116859908
Coord A exon
NA
Coord C2 exon
chr8:116860058-116860188
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGG
5' ss Score
5.85
3' ss Seq
TAAGGGAAGTGACTACTCAGGGA
3' ss Score
-4.1
Exon sequences
Seq C1 exon
GATCCAAGTCACAACAGCGCAACAAGGTCAAGGCTTCGAACTGCTTCCGCGGAAAAGGTGAAGACTATCGAGGCACAACCAATACCACCTCTGCGGGTGTGCCCTGCCAGCGCTGGGATGCGCAGAATCCGCACCAGCACCGCTTTGTGCCGGAGAAATATGCTTGCAA
Seq A exon
NA
Seq C2 exon
GGACCTTCGTGAGAATTTCTGCCGGAATCCTGATGGCTCCGAGGCGCCTTGGTGCTTCACATCTCGACCTGGTTTGCGTGTGGCCTTTTGCTACCAGATCCCACGCTGCACAGAAGAAGTGGTGCCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680-15-10,16-10,17-10-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.470 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(53.2=63.6)
A:
NA
C2:
PF0005113=Kringle=PD(45.6=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTTGTGCCGGAGAAATA
R:
CAGGTCGAGATGTGAAGCACC
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]