GgaALTD1015776-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000012394 | NID2
Description
nidogen 2 (osteonidogen) [Source:HGNC Symbol;Acc:HGNC:13389]
Coordinates
chr5:57993287-57993769:-
Coord C1 exon
chr5:57993581-57993769
Coord A exon
chr5:57993548-57993580
Coord C2 exon
chr5:57993287-57993456
Length
33 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
CCCCTCCATGGTGTGCCCAGGTC
3' ss Score
7.1
Exon sequences
Seq C1 exon
AGCCCTCGGAGCGTCCCCCGACCATGTGTGAGCGCTGGCGGCAGAGCCTGCTGGAGCACTACGGAGGCAGCCCCCGTGGCGACCAGTACGTGCCGCAGTGTGATGCACACGGCCACTTCACCCCGCTGCAGTGCCACGGGGACAGCGGGTACTGCTGGTGCGTGGACGAGAGCGGCAGGGAGATCCAAG
Seq A exon
GCACGCGCTCGGAGCCCGGCAGCCCCCCGCCAT
Seq C2 exon
GTCTCCCCAGCGTCGCACCGCCCACCGTCCGGCCCTCGCCGCGTCCCGACGTGTCCCCGCCGGCCGCAGGGACCTTCCTGCTGTACGCCCAGGGCCAGCAGATCGGCTACCTGCCACTCAACGGCACGCGGCTGCAGAAGGAGGCAGCCAAGACCCTGCTCTCCCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012394-19-25,20-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.434 A=NA C2=0.386
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=WD(100=86.8)
A:
NA
C2:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTGCTGGTGCGTGGAC
R:
CGTACAGCAGGAAGGTCCCT
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]