HsaALTD1005974-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000087303 | NID2
Description
nidogen 2 [Source:HGNC Symbol;Acc:HGNC:13389]
Coordinates
chr14:52014287-52015144:-
Coord C1 exon
chr14:52015119-52015144
Coord A exon
chr14:52015054-52015118
Coord C2 exon
chr14:52014287-52014456
Length
65 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGC
5' ss Score
5.25
3' ss Seq
TCCCACCCTCTCTCCCACAGGTA
3' ss Score
13.04
Exon sequences
Seq C1 exon
TGCCACGGAAAGAGCGACTTCTGCTG
Seq A exon
GTGTGTGGACAAAGATGGCAGAGAGGTGCAGGGCACCCGCTCCCAGCCAGGCACCACCCCTGCGT
Seq C2 exon
GTATACCCACCGTCGCTCCACCCATGGTCCGGCCCACGCCCCGGCCAGATGTGACCCCTCCATCTGTGGGCACCTTCCTGCTCTATACTCAGGGCCAGCAGATTGGCTACTTACCCCTCAATGGCACCAGGCTTCAGAAGGATGCAGCTAAGACCCTGCTGTCTCTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087303-39-31,40-31-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=0.389
Domain overlap (PFAM):
C1:
PF0008613=Thyroglobulin_1=PU(97.0=85.3)
A:
NA
C2:
PF0008613=Thyroglobulin_1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGGAAAGAGCGACTTCTG
R:
CTGCATCCTTCTGAAGCCTGG
Band lengths:
171-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains