GgaALTD1015913-3/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000005507 | NONO
Description
non-POU domain-containing octamer-binding protein [Source:RefSeq peptide;Acc:NP_001026703]
Coordinates
chr4:2256358-2258018:-
Coord C1 exon
chr4:2257876-2258018
Coord A exon
chr4:2257825-2257875
Coord C2 exon
chr4:2256358-2256659
Length
51 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CGGTGACCTTTTATCTTCAGGAA
3' ss Score
8.95
Exon sequences
Seq C1 exon
ATGAAGGCCTGACCATCGACCTGAAGAATTTCCGGAAACCTGGGGAAAAAACCTTCACCCAAAGAAGCCGCCTCTTTGTGGGGAATCTGCCCCCAGATATTACAGAGGAAGAGATGAGAAAGTTGTTTGAGAAGTATGGCAAG
Seq A exon
GCAGGTGAAGTCTTCATACACAAGGACAAAGGCTTTGGCTTTATCAGGCTG
Seq C2 exon
GAAACTCGCACTCTGGCAGAGATTGCAAAAGTGGAACTAGACAACATGCCTCTCCGTGGGAAGCAGCTCAGAGTGCGTTTTGCGTGCCACAGCGCATCGCTGACAGTCAGGAACCTGCCTCAGTTCGTGTCCAATGAGCTCCTGGAGGAAGCCTTCTCGGTGTTTGGCCAGGTGGAAAGGGCTGTGGTGATTGTGGATGACAGAGGGCGATCCTCTGGAAAAGGCATTGTGGAGTTCTCAGGGAAGCCTGCTGCTAGGAAAGCCCTGGACAGATGTAGCGATGGCTCTTTCCTGCTGACGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005507-8-7,9-7,10-7-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PU(61.5=54.1)
A:
NA
C2:
PF0007617=RRM_1=PD(35.4=22.8),PF0007617=RRM_1=WD(100=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATTTCCGGAAACCTGGGG
R:
CAATCTCTGCCAGAGTGCGAG
Band lengths:
144-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]