HsaALTD0004353-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000147140 | NONO
Description
non-POU domain containing, octamer-binding [Source:HGNC Symbol;Acc:7871]
Coordinates
chrX:70511767-70514378:+
Coord C1 exon
chrX:70511767-70511771
Coord A exon
chrX:70511772-70511822
Coord C2 exon
chrX:70514248-70514378
Length
51 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
CCTTTTCTGTGTTTGGCCAGGTA
3' ss Score
9.49
Exon sequences
Seq C1 exon
GAAAG
Seq A exon
GCAGGCGAAGTCTTCATTCATAAGGATAAAGGATTTGGCTTTATCCGCTTG
Seq C2 exon
GTAGAGAGGGCTGTAGTCATTGTGGATGATCGAGGAAGGCCCTCAGGAAAAGGCATTGTTGAGTTCTCAGGGAAGCCAGCTGCTCGGAAAGCTCTGGACAGATGCAGTGAAGGCTCCTTCCTGCTAACCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147140-8-14,9-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.498 A=NA C2=0.055
Domain overlap (PFAM):
C1:
PF053086=Mito_fiss_reg=PD(35.8=60.4),PF0007617=RRM_1=PU(76.7=47.9)
A:
NA
C2:
PF0007617=RRM_1=PD(7.9=6.7),PF0007617=RRM_1=WD(100=97.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)