GgaALTD1016604-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003800 | PABPC4
Description
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:HGNC:8557]
Coordinates
chr23:5421296-5422073:-
Coord C1 exon
chr23:5421954-5422073
Coord A exon
NA
Coord C2 exon
chr23:5421296-5421423
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
CCTGCTCTCTTCTTCTGCAGGTG
3' ss Score
13.74
Exon sequences
Seq C1 exon
GCTTCCAGGGAATGCCAAATGCCATGCGCCAGTCTGGACCACGGCCAGCGCTGCGCCATCTGGCCCCTGCTGGCACTGCTCCTGCCTCTCGTGGCCTCCCTGTTTCTGCCCAGCGAGTTG
Seq A exon
NA
Seq C2 exon
GTGTTACCACTGCAGGACAGAGCTTGGCTCCTCGTCCTCCTGTAGCTGCTCCTGCTCCCAGAGCAGTTCCCCCTTATAAATATGCCTCAAGTGTCCGCAGCCCGCACCCACCTGTACAGCCTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003800-16-19,17-19,18-19-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTTCTGCCCAGCGAGTTG
R:
ATAAGGGGGAACTGCTCTGGG
Band lengths:
98-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]