MmuALTD0009865-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000011257 | Pabpc4
Description
poly(A) binding protein, cytoplasmic 4 [Source:MGI Symbol;Acc:MGI:2385206]
Coordinates
chr4:123295211-123296057:+
Coord C1 exon
chr4:123295211-123295273
Coord A exon
chr4:123295274-123295321
Coord C2 exon
chr4:123295930-123296057
Length
48 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
GACCCTGTTCTCTCCACAAGGCG
3' ss Score
6.06
Exon sequences
Seq C1 exon
GAATGCCAAGTGCCCTGCGGCAGTCTGGGCCTCGTCCAGCTCTTCGACATCTGGCTCCAACTG
Seq A exon
GTAATGCTCCGGCCTCTCGTGGCCTTCCTACTACTGCTCAGAGAGTCG
Seq C2 exon
GCGTCCCTACAGCCGTGCCAAACCTTGCACCTCGGGCCGCAGTTGCTGCCGCCGCTCCCAGGGCTGTGGCTCCATACAAGTACGCCTCCAGTGTCCGCAGCCCACACCCTGCCATCCAGCCGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011257-27-30,28-30-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.576
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCTTCGACATCTGGCTC
R:
GCTGGATGGCAGGGTGTG
Band lengths:
147-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types