Special

GgaALTD1018850-1/4 @ galGal4

Alternative 5'ss

Gene
Description
Paired box protein Pax-6 [Source:UniProtKB/Swiss-Prot;Acc:P47237]
Coordinates
chr5:5225498-5226241:-
Coord C1 exon
chr5:5226227-5226241
Coord A exon
NA
Coord C2 exon
chr5:5225498-5225663
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TTCTGTCCTTTGCCTTGCAGGTG
3' ss Score
12.58
Exon sequences
Seq C1 exon
GTGTCGAATGGATGT
Seq A exon
NA
Seq C2 exon
GTGTCGTCGATAAACAGAGTCCTCCGCAACCTGGCTAGCGAAAAGCAACAGATGGGTGCCGACGGGATGTACGACAAGCTAAGGATGCTGAACGGGCAGACGGGGACATGGGGCACCCGGCCCGGCTGGTATCCCGGCACCTCGGTACCCGGGCAGCCCGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012123-13-8,15-8,16-8,17-8-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

Protein isoform when splice site is used (No Ref)

No structure available
Features
Disorder rate (disopred):
  C1=0.000 A=NA C2=0.804
Domain overlap (PFAM):

C1:
PF0029213=PAX=FE(51.1=100)
A:
NA
C2:
PF0029213=PAX=PD(5.8=14.3)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]