GgaALTD1019985-1/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003197 | RPL7A
Description
60S ribosomal protein L7a [Source:UniProtKB/Swiss-Prot;Acc:P32429]
Coordinates
chr17:6867712-6868175:+
Coord C1 exon
chr17:6867712-6867749
Coord A exon
NA
Coord C2 exon
chr17:6868045-6868175
Length
0 bp
Sequences
Splice sites
5' ss Seq
GATGTAGAC
5' ss Score
-5.21
3' ss Seq
CACACTCTCTCTCTTTTCAGCTG
3' ss Score
12.57
Exon sequences
Seq C1 exon
AGAACAAGAAAGCTCAGCTTGTGGTGATTGCCCATGAT
Seq A exon
NA
Seq C2 exon
CTGGTGGTCTTCTTGCCAGCTCTGTGCCGCAAGATGGGAGTGCCATACTGCATCATCAAGAGCAAGGCCAGGCTGGGGCGACTGGTGCACAGGAAAACTTGTACCTGTGTTGCTTTCACACAAGTTAACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003197-5-11,6-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0124821=Ribosomal_L7Ae=FE(27.4=100)
A:
NA
C2:
PF0124821=Ribosomal_L7Ae=FE(45.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTGGTGATTGCCCATGA
R:
TTTCCTGTGCACCAGTCGC
Band lengths:
118-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]