HsaALTD1026507-1/5 @ hg38
Alternative 5'ss
Gene
ENSG00000148303 | RPL7A
Description
ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
Coordinates
chr9:133350243-133351426:+
Coord C1 exon
chr9:133350243-133350304
Coord A exon
NA
Coord C2 exon
chr9:133351262-133351426
Length
0 bp
Sequences
Splice sites
5' ss Seq
GACGTGGAT
5' ss Score
-10.24
3' ss Seq
GCCTCTTTTTGTCTTTTCAGATC
3' ss Score
12.86
Exon sequences
Seq C1 exon
TTAACACCGTCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGAC
Seq A exon
NA
Seq C2 exon
ATCCGCCGTCACTGGGGTGGCAATGTCCTGGGTCCTAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGTTAAATGTACACTGTTGAGTTTTCTGTACATAAAAATAATTGAAATAATACAAATTTTCCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148303-15-23,17-23,19-23,20-23,21-23-1/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0124821=Ribosomal_L7Ae=FE(27.4=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAAGCTCAGCTGGTGGTG
R:
CTTTGCCTTTTCGAGCTTGGC
Band lengths:
108-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains