HsaALTD1026507-3/5 @ hg38
Alternative 5'ss
Gene
ENSG00000148303 | RPL7A
Description
ribosomal protein L7a [Source:HGNC Symbol;Acc:HGNC:10364]
Coordinates
chr9:133350243-133351426:+
Coord C1 exon
chr9:133350243-133350304
Coord A exon
chr9:133350305-133350392
Coord C2 exon
chr9:133351262-133351426
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAAGTCAGT
5' ss Score
2.74
3' ss Seq
GCCTCTTTTTGTCTTTTCAGATC
3' ss Score
12.86
Exon sequences
Seq C1 exon
TTAACACCGTCACCACCTTGGTGGAGAACAAGAAAGCTCAGCTGGTGGTGATTGCACACGAC
Seq A exon
GTGGATCCCATCGAGGTGCGTTTGCCTGTTGACTGCTAACCCAAGGGCTTCTGGCAGTACCAGGAAGAGAGAGTAGACCTAATGCCAA
Seq C2 exon
ATCCGCCGTCACTGGGGTGGCAATGTCCTGGGTCCTAAGTCTGTGGCTCGTATCGCCAAGCTCGAAAAGGCAAAGGCTAAAGAACTTGCCACTAAACTGGGTTAAATGTACACTGTTGAGTTTTCTGTACATAAAAATAATTGAAATAATACAAATTTTCCTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148303-15-23,17-23,19-23,20-23,21-23-3/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0124821=Ribosomal_L7Ae=FE(27.4=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACACCGTCACCACCTTGG
R:
TTAACCCAGTTTAGTGGCAAGT
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains