GgaALTD1024560-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000003526 | TUBGCP2
Description
gamma-tubulin complex component 2 [Source:RefSeq peptide;Acc:NP_001006496]
Coordinates
chr6:8903470-8904826:-
Coord C1 exon
chr6:8904726-8904826
Coord A exon
chr6:8904591-8904725
Coord C2 exon
chr6:8903470-8903638
Length
135 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TATGTCCTATGCGGCGGTAGGTT
3' ss Score
5.37
Exon sequences
Seq C1 exon
GCGTGTCGAACACCTGAGAGCAGCCGGAGATGTGGCAGTAAAACTCAGACACCCTGTACGGAAGGACAGCGTGTTACGGCATCCTCAGCATGCAAGTGAAT
Seq A exon
GTACGTACAAGCCTCATTAAAAGGCTCTGCCCCAAAGGCGGTGGGCACGGCACAGGCTGCCCAGGGTCACGGCCCCGAGCTGCCAGAGCTCAGGAGTGTCTGCACACAGCTCTCTGACGGAAGGTTCGAGTCCCT
Seq C2 exon
GTTGGTTTTCACTCACAGCATGAGTGAGTTCCGCATCCACCACGATGTCAACGAGCTGCTCAGCCTGCTGCGTGTGCACGGTGGTGAGGGGGCTGAGGTGTACATCGACCTGCTGCAGAAGAACCGCACGCCCTACGTCACCACCTCTGTGTCTGCACACAGCGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCGAACACCTGAGAGCAG
R:
CACAGAGGTGGTGACGTAGGG
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]