GgaINT1030594 @ galGal4
Intron Retention
Gene
ENSGALG00000003533 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:HGNC:28445]
Coordinates
chr6:8904186-8904489:+
Coord C1 exon
chr6:8904186-8904329
Coord A exon
chr6:8904330-8904415
Coord C2 exon
chr6:8904416-8904489
Length
86 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCCGTGTCCCCCCGCTGCAGGAT
3' ss Score
9.82
Exon sequences
Seq C1 exon
ATGCTGCTGTCCGCCCTCCGCCACCGCTTGCGGGAGCGCCCGCCGCTGCCTCCCGTCCCGCCGCCCGCCTCGGCCCCGCCGCGGCCGCCCTTCGCTTTCTCCCCGCGCCGCCTGCGCCTGGGCCCGCAGCACCCGCTGCTCGAG
Seq A exon
GTGAGGCGGAGGCGAGGCGAGGCGGGCCGCGCGGCGGCAGGGCTGCCCCACGGCTGCCCCACGGCTTCCGTGTCCCCCCGCTGCAG
Seq C2 exon
GATGGCGACGTGCAGAGGCACCTGTACCTGCGGGAGGCCCTCACGGGCCGCGCCGAGGAGGCGGAGAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533:ENSGALT00000005587:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCTGTCCGCCCTC
R:
CAGGTACAGGTGCCTCTGCA
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]