BtaINT0165608 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012416 | ZNF511
Description
Bos taurus zinc finger protein 511 (ZNF511), mRNA. [Source:RefSeq mRNA;Acc:NM_001206234]
Coordinates
chr26:25941158-25941636:-
Coord C1 exon
chr26:25941484-25941636
Coord A exon
chr26:25941232-25941483
Coord C2 exon
chr26:25941158-25941231
Length
252 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
CGCAGAGCTGTCTTCCGCAGGAC
3' ss Score
6.25
Exon sequences
Seq C1 exon
ATGCAGTTGCCGCCCGCGCTGCACGCCCGCCTGGCGGGGGCCCCTGGGGCGGCCGCGCCGCTGCCCGTGCAGCGGGACTCCCTGGCCGGGAACGCGCCCTTCCGCTTCGCGGCGCGCCAGGTGCGCTTCCCGCGGGAACACGAGTTCTTCGAG
Seq A exon
GTGCGTGAGCAGAGGAAAGAGAAGGCAGTTGCGGGTGGGGGCGGAGCGGATCCCAGGTGGGCGGGGCCAAGGCTCGGGGCGGGGCCCGGGGCCCTAGGGGCGGGGCCCGGGGCTAGGGGCGGGGCAGGGACCCGGGTGGGCCAGAGCCGGGGTCCTAGGGGCGGGGCCCGGGTCCTGGGGGCGGGGGCAGGGCCCGTGTGGGCAGGGGCCCTGGCGGGCGGGGGTTCGAGCACGCAGAGCTGTCTTCCGCAG
Seq C2 exon
GACGGAGACGTGCAGAGGCACCTCTACCTCCAGGATGTGATTACGCAGGTGGCTGCGGAGCCGGAGAGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012416:ENSBTAT00000016475:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCGGGACTCCCTG
R:
GCCACCTGCGTAATCACATCC
Band lengths:
140-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]