MmuINT0179351 @ mm9
Intron Retention
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:147222290-147222792:+
Coord C1 exon
chr7:147222290-147222505
Coord A exon
chr7:147222506-147222718
Coord C2 exon
chr7:147222719-147222792
Length
213 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TTGACGCGTGTCTTCTGTAGGAT
3' ss Score
10.01
Exon sequences
Seq C1 exon
AGTAGACGTCACGTCCGTCACCACCCCTCCGACGGTGGCCGAAGGGCCGCGGCGGCCGTGGTGATGTTGCTTCCCCCTGCACTATATTCCCGCCTGGCCGGGGAGCCGGGGGCAGCCGAACCGCTGCCCGTGGAGAGGAACCCTGCGGCTGGGGAGGCACCCTTCCGATTCGCGCCGCGTGCCGTGCGCTTCCCGCGGGATCACGAATTCTTCGAG
Seq A exon
GTGCGTGACAACCCGGGCGGAAGATGTCCTGAGCCCCACAGGGAGGGGCCTAGAAGCAAGACTGTCGCTGTGGGCGGGGCTTGTGGGGACCGGACCTGTGGACCGGATCAAGGGGCTGGACACAGCTCTATGGGTTGGGGCGTGGCTCCGAGCTGTAGGGCGTGGCTTCGATGCCGGAGTCCACCCACAGCTCTTGACGCGTGTCTTCTGTAG
Seq C2 exon
GATGGGGATGTGCAGCGGCACCTGTACTTGCAGGACATGCTCACGCAAGTGTCCGAGACGCCGGAAAAATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470-Zfp511:NM_027201:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=NA C2=0.013
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF072556=Benyvirus_14KDa=PU(34.1=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCACGTCCGTCACCA
R:
ATGGATTTTTCCGGCGTCTCG
Band lengths:
285-498
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: