RnoINT0168299 @ rn6
Intron Retention
Gene
ENSRNOG00000018272 | Zfp511
Description
zinc finger protein 511 [Source:RGD Symbol;Acc:1308585]
Coordinates
chr1:212359177-212359816:+
Coord C1 exon
chr1:212359177-212359525
Coord A exon
chr1:212359526-212359742
Coord C2 exon
chr1:212359743-212359816
Length
217 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
TTGGCGCGTGTCTTCTGTAGGAT
3' ss Score
9.73
Exon sequences
Seq C1 exon
CTGGCTCGCGTTCCGGATCCCGCGCCCGGCTCCAGCCCCGCCCTTCTCCGACCGGTTCCCGCCACAACATAGACCCAGCCCTGACTCACCTCCGCGCGTCGCGTCCCGCCCCGCAGGGTCGCCACAGGAAGTTAATAGACGTCACGTCCGTCACCACCCCTCCGACGGTGGCCGAAGGGCTGCGGCGGCCGTAGTGATGTTGCTTCCCCCTGCACTATATTCCCGCCTGGCCGGCGAGCCCGGGGCAGCTGAACCGCTGCCCGTGGAGCGCAACCCTGCGGCTGGGGAGGCACCCTTCCGATATGCGCCGCGTCCCGTGCGCTTCCCGCGGGATCACGAATTCTTCGAG
Seq A exon
GTGCGTGAGAAACCCGGCGAAAGATCTCCTGAGCTCCCCCCCACGGGGCGGGGCCTAGGAGCAGGACTGCCGCTGTGGGCGGGGCTTGTGGGGCGGGACCTATGGACAGGACCAAGGGGTTGGATGCATCTCTGTGAGTTGGGGCGTGGCTCAAAGTTGTAGGGCGCGGCTTCGAGGCCCGAGTCCACCCACGGCTCTTGGCGCGTGTCTTCTGTAG
Seq C2 exon
GATGGGGATGTGCAGCGGCACCTGTACTTGCAGGACATGCTCACGCAAGTGTCCGAGACGCCGGAAAAATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018272:ENSRNOT00000046314:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCGCCACAGGAAGTTAAT
R:
ATGGATTTTTCCGGCGTCTCG
Band lengths:
308-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]