HsaINT1047501 @ hg38
Intron Retention
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:HGNC:28445]
Coordinates
chr10:133308475-133309463:+
Coord C1 exon
chr10:133308475-133309096
Coord A exon
chr10:133309097-133309389
Coord C2 exon
chr10:133309390-133309463
Length
293 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
ACGGCGCACTTTTCCTGCAGGAT
3' ss Score
10.46
Exon sequences
Seq C1 exon
CCAGGGACTGCAGCGGGAGACGACAGGCGGGGCAAGGCGGACGGGAGAGGGCGTGCGAGAGGGGGACCTGCGACCCGGCTTCCCAGGGCTGGGAGGGGACACCCGGGACGACCCGGAGGCCCGCTCCGCCCCGCCCCGGCTGAGTGTCGGGCCGCGGGGCAAGACGCTGGCCTGGCCGGTGCAGGCCCGAAGGGCTTCGGCCCCAGAGTTCGGGGACCGCTGCACAGCCAGAGGGAGCGCGCGGGAAGAGCCGCGTCCCGCCAGCCCCGTCGCCTCGTGGGCCCCCCCGGGCCTGGCAGTCCCCCAACCCCCTCATCACGCCCGCGCCCGCGTTCGGCCAGGACTCACCGCAGTCCCGGAGCCACAGCCCCCGCGCAGCCCCCGACGGCGGCGGAAGTGAGCGTGACGTCACGTCCGGCTCGGCTCGCGGACGGTGGCCGACAGGCTGCGCCCGCCCGCGCCCGGGGTGATGCAGTTGCCCCCCGCGCTGTGCGCCCGCCTCGCTGCGGGGCCCGGGGCGGCGGAGCCGCTGCCTGTAGAGCGGGATCCCGCGGCTGGGGCCGCGCCCTTTCGCTTCGTTGCGCGCCCCGTGCGCTTCCCGCGGGAGCACCAGTTCTTCGAG
Seq A exon
GTGCGTGAGCAAAAGAGGGAAAAAGTAGTTGTAGGATCCAGTGGGGCCTACGGCGGCGAGGCGGGGCCGGAGCCTGGAGTGGGAGGGGCCTACGACTGCGGGGCGGGGCCGGAGCCTGGGACAGGCGGGACCTGAGGTGGTGGGGCGGGGCCGGAACGTGGAGTGGGCGGGGCCTGAGGCTGTGGGGCGGGACCGGAGCGCGGGATGACTGGGGCCACGGGTGTGGGCGAGGCCTGACGCGGTGGGCGTGCCGCGAGTCACCTGGCCCCGCCCACGGCGCACTTTTCCTGCAG
Seq C2 exon
GATGGGGACGTGCAGCGCCACCTCTACCTCCAGGACGTGATCATGCAGGTGGCCGACGTGCCTGAGAAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546:ENST00000361518:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGAGCGTGACGTCAC
R:
CTTCTCAGGCACGTCGGC
Band lengths:
299-592
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains