GgaALTD1024806-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18027432-18028290:-
Coord C1 exon
chr7:18028186-18028290
Coord A exon
chr7:18028183-18028185
Coord C2 exon
chr7:18027432-18027605
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
3' ss Seq
AATTTTATTTTTTACTTCAGGAA
3' ss Score
8.59
Exon sequences
Seq C1 exon
ATATTAATGGATCATCAGAATTTGTCAGAACACGTCCTTTGTATGGTTTTGTATTTGATTGAACTGGGGTTGGAAAATTCTCCAGAACGCGAATCAGATGAAGAG
Seq A exon
GTG
Seq C2 exon
GAATCTACAGGTGGACAAGAGCGTTGCCATGACAGTTGGTTTCCAGGTAGTAACTTGGTTTCTAACATGCGGCATTTCATTAACTACGTCCGAGTAAGAGTACCAGAAACTGCTCCAGAAGTGAAGAAAGAACCACCTGCAAGTACCAGTTCAGATGGTTTAGCTTCATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608-29-41,30-41-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAACGCGAATCAGATGA
R:
TGCCGCATGTTAGAAACCAAGT
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]