GgaINT1029152 @ galGal4
Intron Retention
Gene
ENSGALG00000009608 | UBR3
Description
ubiquitin protein ligase E3 component n-recognin 3 (putative) [Source:HGNC Symbol;Acc:HGNC:30467]
Coordinates
chr7:18027432-18028290:-
Coord C1 exon
chr7:18028186-18028290
Coord A exon
chr7:18027606-18028185
Coord C2 exon
chr7:18027432-18027605
Length
580 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGTA
5' ss Score
-1.91
3' ss Seq
AATTTTATTTTTTACTTCAGGAA
3' ss Score
8.59
Exon sequences
Seq C1 exon
ATATTAATGGATCATCAGAATTTGTCAGAACACGTCCTTTGTATGGTTTTGTATTTGATTGAACTGGGGTTGGAAAATTCTCCAGAACGCGAATCAGATGAAGAG
Seq A exon
GTGGTAAGATGTTTCATTTTAATAGAACCTCATTGAAAAATTTTCATTAAAAAAAGTGTTGTCTAGTGGTTCAACGTAGATCAGTTATACATCCTTACTAATATTTTGTAAATCAGTACTGGTAGCTTGCTGGGAAAAAAAAGATTTGAACCTAAAACTCGGATTCCTAGATTTTCAAATGAAACCATGATCAACATTGCCATTAGCAGTTATATTTTTCTTATAGGAATTACCTTTTTTCATTTTTGAGATTGACTTGTGTAAACTTTGGATTATTTGTTGTGTTACTTTTAGATTGCACAGTTTCTTATTACCCTGTTTCTTTTGCTTTTGTTAGATAGCAATGATAACATGATATATATTTATTTACCAGAGTTGTAGTCTTCAAGGTCATTACTACAATTAAATTATTACATCAGTCATTGTTACAATTAAAATGTTGTATCAGGTTTAGTGAGGTACTTTTACCATAATGTTGATATCTTGTGGAGAGCTGAAAGTTTTTGCAGTACGGTTGTAAGTTGCAATAATCTATGTAGATTTTATGAGGAAATATGTACAATTTTATTTTTTACTTCAG
Seq C2 exon
GAATCTACAGGTGGACAAGAGCGTTGCCATGACAGTTGGTTTCCAGGTAGTAACTTGGTTTCTAACATGCGGCATTTCATTAACTACGTCCGAGTAAGAGTACCAGAAACTGCTCCAGAAGTGAAGAAAGAACCACCTGCAAGTACCAGTTCAGATGGTTTAGCTTCATCACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009608:ENSGALT00000015660:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCATCAGAATTTGTCAGAACACG
R:
TGTGATGAAGCTAAACCATCTGA
Band lengths:
270-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]