MmuINT0169536 @ mm9
Intron Retention
Gene
ENSMUSG00000044308 | Ubr3
Description
ubiquitin protein ligase E3 component n-recognin 3 [Source:MGI Symbol;Acc:MGI:1861100]
Coordinates
chr2:69808194-69809290:+
Coord C1 exon
chr2:69808194-69808298
Coord A exon
chr2:69808299-69809116
Coord C2 exon
chr2:69809117-69809290
Length
818 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
ATTCATTACATATGTCTTAGGTA
3' ss Score
6.24
Exon sequences
Seq C1 exon
ATTCTGATGGATCATCAAAATCTGTCTGAGCATGTGCTGTGCATGGTCTTGTACCTGATTGAGTTAGGCCTGGAGAACTCTGCTGACGATGACTCCGAGGAAGAG
Seq A exon
GTAAGCACTGTGTCTTCTCTTAGGGCAGCTGCCTGGGCAGGTTTCTCTGGAACTCACCCTGTAGTCCAGGCTGGGCTTACACTCAAAGATCCACCTTTTCCTGCCTCTTGAGTGCTGGGACTAAATGTGTACACTACTATTTTTTATGTATATTGTTATTTGCCTTCATTCTTATCTGTACAGCATTTATACATAATACCTTTGGAGGCCAGAAGTAGGCTTCAGATTCTCTGGAACTGGAGTTACAGATGTTTGTGAGCTGCCAAGTGGATGCTGGGAACTGAACCTGGATCTTCTGGAGGAGCACACTGTGCTCTTAGCCACTGAGCTAGCTTTCCAACCCCTATGTTTAGATTTTTAATTCTTAAATCTGAAGAAGTGATAAGAAGGCCCTATATATTAATTTATTTAGTGAGTATGGATGTGCACCATGATGCACATGCTCAGCTTGCAGGAGTTTCTCTCCTTGTACCATATGGGACCTGGGGATTTAACTCATGTCGTAAGGCCTGACTGATAGTGTACTCGCTGAGCCTACTCTCTGGCCTAAAAAGGCTTTATTCTTAAGATACATATGGTCCTTTAAAACTTCCCTTGACATTTATGGAATTACTTTATGCATAAAACTGTTGAAATTTATCATTTCAATGAAAAAAATTAAAGAAAGCTATTTATTTATTTTTGGTGTTATAGTGGGAACACAAATTATGGATTCTGGGGAGTGTATGCACAATTATGGATTCTGGGGAGTGTATGCACATGTGAGCACTTATTTTCTTGTCATTCATTCATTCATTCATTCATTACATATGTCTTAG
Seq C2 exon
GTATCAATGGGTGGACCAGAGCGTTGTCATGACAGTTGGTTCCCTGGCAGTAACTTGGTATCAAACATGAGGCACTTTATAAATTATGTTAGAGTGCGAGTCCCAGAGACGGCTCCTGAGTTGAAAAGGGATCCCCTCGCCAGCACGAGCTCTGACGCTTTGGACTCTTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044308-Ubr3:NM_001081548:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.233
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGATCATCAAAATCTGTCTGAGC
R:
AAAGAGTCCAAAGCGTCAGAGC
Band lengths:
270-1088
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: