GgaALTD1024996-2/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000013073 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr2:79901618-79902046:+
Coord C1 exon
chr2:79901618-79901718
Coord A exon
chr2:79901719-79901722
Coord C2 exon
chr2:79901982-79902046
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
GTTTTAAAATATAATTCTAGGTC
3' ss Score
6.93
Exon sequences
Seq C1 exon
GCTGCGGGGACCGGCCAGAGCCATCGCGCAGGAGGAGCGGCAGCGGGAGGAGCAGTCAGGAGCAGTCAGAGCCCCCAGACGTGCCTCTCCCGGGCAGTAAG
Seq A exon
GCAG
Seq C2 exon
GTCCAAGCATACATGGCTCCTGGTGTCTCGAATGAGAAGAAAACGGAAGATGAACAGTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073-3-0,4-0,5-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGCAGTCAGGAGCAG
R:
CTCATTCGAGACACCAGGAGC
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]