GgaEX1062315 @ galGal4
Exon Skipping
Gene
ENSGALG00000013073 | UPP1
Description
uridine phosphorylase 1 [Source:HGNC Symbol;Acc:HGNC:12576]
Coordinates
chr2:79900370-79902046:+
Coord C1 exon
chr2:79900370-79900822
Coord A exon
chr2:79901608-79901747
Coord C2 exon
chr2:79901982-79902046
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATGCTTCGGGCTTATGACAGATA
3' ss Score
5.32
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
AACTGGGCTGCACCCAAAGAGGGGTGGCTAGCAGGGAGAGGGAGGGGATTGTCCCTATGATGCTCTGCCCTTGTGAGGCTCCATCTGGAGTACTGCATCGAGGTCTGGGGCCTCCAGAACAAGACGTAGAACATGGCGTGAGTGAGTCCACAGGAAGGCCATTAGGATGGTCAGAGTGCTGGAGCACCTCTCTTATGAAGAAAGGCTGAGGGAGCTGTGCTGAACCCGCAGCCTCGAGGCAGAGAGCCGGCGAACAGCTGCAGGACACCTCGGCCACCGCCGCACACCGCTCAGCCGGCGCGCACGGAGTTAACCGCTCCCGGTGCCGCGCTCCTTCGGGGCGGGGCGGCCTAGCCCGCTGCCGCAGCCGGGAGGCGGCTGGGAGCGCGCGGCGCGGCACGGCTGGGGCTGTGGGAGCGCTGCGCGTGGTGTTCGCTGCCCCGTGGCGCCCAG
Seq A exon
ATAGAGAGGAGCTGCGGGGACCGGCCAGAGCCATCGCGCAGGAGGAGCGGCAGCGGGAGGAGCAGTCAGGAGCAGTCAGAGCCCCCAGACGTGCCTCTCCCGGGCAGTAAGGCAGGTGCTGTTGGTCAACAGGAGCAGCG
Seq C2 exon
GTCCAAGCATACATGGCTCCTGGTGTCTCGAATGAGAAGAAAACGGAAGATGAACAGTCTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013073_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGCCGGCGAACAG
R:
ATTCGAGACACCAGGAGCCAT
Band lengths:
247-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]