GgaALTD1025090-1/3 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000004142 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5709678-5712127:+
Coord C1 exon
chr17:5709678-5709778
Coord A exon
NA
Coord C2 exon
chr17:5712024-5712127
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGTGCCCTTTCTTGTCCCAGGAA
3' ss Score
8.65
Exon sequences
Seq C1 exon
CTGCCCGGCGCCCGCGGCTCCGCTCGGCCCCACCGCCGCCTCCTGCAGCGCCGGGCGCGGCCTCCCCAGCGCCCTGCCCGCGGCGGGGTCGGGCCCGGCAG
Seq A exon
NA
Seq C2 exon
GAAAACACCTTCCTGCAGTGAGAATGGGGGATACGAGAGACATCTGCCCTCACCTGGATTCCATAGGAGAGGTGACCAGGGATGATCTGCTGCTCAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142-0-1,1-1,2-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]