GgaINT1029478 @ galGal4
Intron Retention
Gene
ENSGALG00000004142 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr17:5709761-5712127:+
Coord C1 exon
chr17:5709761-5709778
Coord A exon
chr17:5709779-5712023
Coord C2 exon
chr17:5712024-5712127
Length
2245 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
AGTGCCCTTTCTTGTCCCAGGAA
3' ss Score
8.65
Exon sequences
Seq C1 exon
CGGGGTCGGGCCCGGCAG
Seq A exon
GTGAGAGCGGCGGCGGGGAAAGGCCCGGCTTGTGGCGGCCTTCGCCCCTCAGAGCGCTGCCCGGGGAGCGGCAGCCGGCGCGTCCCCGGCAAAAAACGCGTGTCACGGCGCGTCCGGGCTCCGTCCTGCCCGTAGGCCCCGGGGCGAGCTGCGCTCCGCGTAACGGCGGCGGCTGAGGGCTGCGGCGTGGTACGGAGCGGAGAACCGAGCAGCGGGCGGCGGTGGGAGCGCCTGGCGGGGCTGCGGGGCCGCTGTGACGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCGGTGCTGCTGTCCCGCACGGCTGCTCGGGAGGGCGGACGGACGGACGGCGCTGCGGGCGCTGCTCTCCCATCGCACGCCGGGGGTTTTGACGGCGGAGCTCAGCGCTCCGGCACGGATTTGTTGTGTAACTCCGAGTTTCCCGAGCGGCGCCCGGGAGCCCCGCGGGCAGACGGCGGTAAGGCCTGCGCTGAACGCTTCCGATGCGCTCAGTTGTGGCTGGGAGGCGAAAGTGACGTTTCTCGTTCTGTTTAGAAAAGGAAACTCCGGGCGGGACCGTCGGCATCCCGGCACGGCCGGGCTGAGAGGCGCAGCGGTGGTGTCGGGTAGAGGGCTGTAAAGCGTCCGTAAGGCCGCGCTGTGCGCCGTGTGCTCTGAGTGCGGCCCCCGCTCGGCCCGGGGGGGGGGGGAGCTGAAGCGGTCCGGAGTTCGTTTTAAAACAAGGTTTTATTCATTCGGTTTTCTGGGGGGGAAAAAAAAAGAAAGGGAGGAAATGGAGGAAGCTGGAAGAGCAGAAATGGCACTGATGGGTGGGTTTTTTTCGAGTTGGATCTGCTGATGTGTTTGCGAAAAGGAGTCCGTTCTGATGGAGGAACTCAGAGCCTGAAAGTGTCCCAGTTTTGTGTGTCAGTCACACGCTGTGCTGTTGTCACTTCTAAACCCCTGTGTGTTATGTGGCAGCGTTTCTCTCTGTGGAGCTCCTCGGCTTTCCCAGTTGCTGTTAAGCAGCTCCTCCCGGGATGCTGCCTGCAGTCACTGCTGTGTTTGCAGTACGGAAATGTGATTCCTTCTTCCAGTTCTGCTTTGCTCCTTCAGTTCAGGAGTGCTGCAGAGCTTTTCTGCTCCCAGGATAAGTTGCTGCAGTGGCTTATGTGTTTATCCCCTTTGTTATTACTGCTGTTTTCCTGCTGTCGGTGATTCAGACCAGGTAGCACTGAAAATCCTTTCTGACGTCCCTGAAATGGGAAATCAGCGCAGAGCAGAGGCTGTGCTCTTGGGGTTATTGCCATCCTCAGTTCATCTGAATTTTGGGTTTAGGTTTTGTAGTGATGTGAGCTTTTCGTGCCTGCTTCCCTTCCAGCCAACAGCATTAGTTTGGATCCCAGTCTGTGCTGTTAATATCGCTTCTCCTTTATTTTCCCCCCTTTTCATTTTAACAGCCCCAAATGAGGTTACTTGAGCTACACTTAGGGGAACACTCCACTCATCTTGTTTTTACATTTGCACATTACTGAGACATGTCTGAAGTCTTTAACGTACCTGTGGAGCACCATGACAGTGTTTATGGTGCTCATAAGCATGCAGCTGTGAGATCCTCTGTGCTTGCAGTGCTCGGCTGCGTGAGCTGTGCTGAACAGCTCCATTCAGTCTTGGAGGGTTGTTCAAAAATCCACCTATTGAATGATAAATTCCTCAGAGACTGAAGGTGGGTTATCAGAGATCCTCTGAGTCTGATTCCCTCTTGTGCAGCTTCATTTGAACAGCAGTCATGTTTCTAATGCCCCCAGACGTTGGATGCCGGGTGCTTCTCCTGGGCTGCTGCGCCCTTTTGCTTTTAATCTAAGTTTCATGCAACCAAGCTAATTAGATCTGTATCTCTTTGTGCTGCGTGTTTATGTTTGGCGAGAGGAATGCAGTTCAGATCACCACGGTTGTTTCTCCACCCTGGGATGTACAGCCCAGTTTCTAGGGGGTCAGGTGTGGTTTCTGGGTCTGGCTGAGTGTTGCCCTGCTCACTTAGCTGAGGTCCCATAACAGTGCCACTCAGCAACGGGATGGAACTGTGTGAGCTGAGATCACTGCGTCACACTGAGATGTAATTTGATCTCTTGGAACCTTACGTATGAATATCTTAATTTCTAATTTGCTAATATAAAAACTAGGCTAATTTATCTTCTTGCTGTCTGTGAGAGCAGTTCTGACCGTGACCAAACAGAAGTGCCCTTTCTTGTCCCAG
Seq C2 exon
GAAAACACCTTCCTGCAGTGAGAATGGGGGATACGAGAGACATCTGCCCTCACCTGGATTCCATAGGAGAGGTGACCAGGGATGATCTGCTGCTCAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004142:ENSGALT00000006585:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]