DreINT0172487 @ danRer10
Intron Retention
Gene
ENSDARG00000027501 | usp20
Description
ubiquitin specific peptidase 20 [Source:ZFIN;Acc:ZDB-GENE-040426-1219]
Coordinates
chr5:32698551-32700950:+
Coord C1 exon
chr5:32698551-32698663
Coord A exon
chr5:32698664-32700851
Coord C2 exon
chr5:32700852-32700950
Length
2188 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATTTTTGTGCTTTTCAATAGAGT
3' ss Score
8.28
Exon sequences
Seq C1 exon
AGTATGGATGCTGCTTAGTAGTAACGTTACACTGCTTCCCACCACTGTTACAAACACCTCCGATTGGCCTAAAATGACTATCTATGAGCGATATTTTTGTTTCTGTATGACAG
Seq A exon
GTAAATATCTGTTTCTGTCTTTCCTTTTGCTAAATCGGACTGTCACTGTTGTTTGATATGATAACATCATGTCGACTCAGCGTATGAATAGTGTCTTGCAGACCGAGTGGAAATATGGCCTGTTTATTCTGCAAGATCGTGATGTTAAACAGCTTTTAGGTGGTTCACCGTGACGTATTTGAGGACTGCTGTGTGTTTATGAACATAATAAACACCGAAGACGAAGAGGAAAAACTATTTGTTTTGTTTTAGATATTATGTTTTAATTCAGATGAATTGTTTGCATTACATTCATATTAACGCGATTGTTTTCTGCGTCGTTTCGGACTTCAGTTGAAGTTAGTTTTCTAGTGAAAATTTGATTCATAGAATCATGTTTTTTTATATCAATTATTGTATATTTCCCTTGCTGTAATGGAGGTGTTGGTACGGGACGAATGTTTTTTTTTCCCATCAACTGACTAGGCGAATGAAACAGCAATTTTGGCCTCTTAACAGTTCTAGGCAGAAACATAACACACATTGAGCAGATATGCTAGATAGATACCATCCTCAATACTCTATAAATATTTTTAAATTTTTATACTTATAAAAAAAATATTATATAATATGGTATATATTTCCGTTAATATCTATTCAATGAGGGCAGATTTTTATTTATAATTCTCACTGGTAATGAGAGTGTAAGGTTCTTATGGGGACAGTTTATCAAATAATTTTGTCATCATTTCATATTAATGAAAGTTTATGGTTTCTGACTTTTTGATTTTTGTTAATTTTGGAGAAAGATTTTTAAAAATCAATGTTATTTACTGTATTGGTGCTGCGCAGTCTCAGAGCTGTACCAGACATTCTTAAAGGGTTTGTTTACCCCAGAAATAAAATAAAAAGAAAGGATTATTATTCAACCTCATGTTGTTCCAAACTCCACAAGACCTTTATTCATTTTCAGAATACAAAGTAAGATATTTTAGATCAGGGCTGCACAATATATTGCTTCAGCATCGATATCATGATCAGTATTACACAATAGTCACATAGCAGGATCTATGCTATGTTGAGTTTGTTTTTGATGCCTGTGATTGTATAATGATTTTAAAAGCATTCAGGTATAAGAAATTGTACAACTTGTGACCTTAACTACTTTAGTTTTTATCATTCAGTTACTGCACTTAAATATTTTTAGACTCAAAAAACGATAAAATACTTTATTTCAATTGTATCTTTTTCTTAATTTTATTTATAGATTGTTATTCATGAAAATACCCACAACACATTCAAATACAGAAATACTCTGCAAATAGCACAGACCACAATAAAAATGTGTCAGGGGGACTCCAAATAGTTTATAGATTGTTTATTAGATTTAATGGAGATGCACTTCCACTGCAGAATCATCCCAATAAATCTAACATTATAACTTTTTTCCAAATAGAAAATAGAAGTAGAGTCATTTGCTGAAATTGTGTTCATATCGCAAAATATATTGCAAAAAAAATATATATATTGCAATGTTAGATTTTTCCACTATTGTACAGCCTTATTTTAGATTAAATCTGAGAGCACTATGATCTTCCATAAACAGCAACCATCTGACTTGTTCAAAGTCCAGAAAAATACTAAAGCATCCCATATATCCTTTCAGTTGTTCAATTAGAGCATTATAAAGATACAAGATTACTTTTGTGTGCACCTAAAGCAAAAATAAACAACAATATTTCTTCTCCCCAGTCCAGCACTCCATGCTGTGGCCTTTATGCATGTCACGCTCCTGATGTATTGTTTGGATGTGCCTGTGCTTTGTTTCAAACAGAGGAAGATTGTGTTGACATCTGAGGTATACATCAGTGCTCATGAAAGTGCACCATATACTAACCAGAATAGAAAGAAACTGTTGAATAAAGGTGTTTTATTTATGATAAATGATTTATTTTTATTTATTTATTCATTTTGTTATTGTTACATAATATTACGATTGAACCATTTAAGATACATGGACTATTTTAATTATGTTTTGTGGTATCTTTGAGGATTTTGAATGAGTTGGGACCATTGCTATCCATGGAAGATGAGGGAGCTCTAAGATATTTTAATTTGACTGGGTTTAGAACAACATTAGGTAGAATACTTATTGACAGACTTTTTGGGTGAGCTGTAACTTTGAAGTGATTTTTGTGCTTTTCAATAG
Seq C2 exon
AGTGAGAAGAAAATCAGGATGACTGACAGCGGGGATCTTTGTCCTCACTTGGACTCGATTGGTGAAGTTACTAAAGAAGAACTGATTCAGAAATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027501:ENSDART00000006021:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]