HsaINT0178683 @ hg19
Intron Retention
Gene
ENSG00000136878 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:12619]
Coordinates
chr9:132612092-132614915:+
Coord C1 exon
chr9:132612092-132612203
Coord A exon
chr9:132612204-132614818
Coord C2 exon
chr9:132614819-132614915
Length
2615 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTGCTTGTGTCTTCTCATAGGTG
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCTCCTTGCCAGAGGCCTCCACTCACTCCAGACCCCTATAGCCCGTCGCTGTCAGCTGTCAACAAAGGATGCGAATGCTGGCCGCTTCCTGTGGGCTTCGTGTCACCCAGAG
Seq A exon
GTAAGCCCATGGCCTCCTCTCGGGTCCCTTCAACACGGACTGAGGAGGACACATGGATTTTTCTCTTTAGATGAAAGAATGGAATTGTGATTATGGGGTTTTTTTTTTTAAGTCTTTATCTCTTAGAAAAATACAGATGGAATGTGATCGCCTGTGTGTCTGGGACTTGCTACAAAAGCAAGAGGAAGCAGGAGGTTGAGATGAAGCAAGATTGGCCATGAGTTGTTAATTGATGAGTCTAGGTACATGGAAACATGGAAGTGCGTTATATAGTTTGGTCTACTTTGTTTTTTCCTTTTTTTTCTTTATGCTCATCTTTAATGTGACGGTAAGTTCTGCCTGCTTTTCACATTTACATTTTCTATAAGTTAGAAAGCAACTGAGCGGGCCCTTAGGATCTGACCCACTTGAGGTTCAGCTCTAGCGCCAACATTCCTATGAGACCTTAGACAAGAAGGAGCCTCTGTTCCTTAGTCTGTGAAATGGGGCTGATCACAGCTGCCTCAACGATTGCTGGAAGAGTTTTTCATAAACGAATGCACAAAAAGCACTTGGTTTGGTATCTGACACCTCATGAGTTTTAGTAACTCACGTTCTGAATGAGAATCTGGCCAGTTGACCCTGGCTGACCATTTGGGACAGGGAGGGGCACGTAAGGAGGAGTCTGGGGGTCCACCTCTCAGATCAGGTGGGCACACATGCAGCTTCTGCCTTTGTTTTTTGTTTTTTGTGTGTGTGTGTGTGTTTTGGGATGGAGTTGCGCTCTTGTTGCCTAGGCTGCGGTTCAATGGCACGATGTTGGCTTGCCACAACTTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGCTTGTGCATCATGCCCGGCTAATTTTGTATTTTTAGTAGAGACGGGATTTCTCCATGTTGGTCAGGCTGGTCTTGATCTCCTGACCTCAGGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCGCACCCAGTCTTTTGTTTTGTTTTTAAGACTCATGCAGTCACAGAGGCTTCTGCCTTTGGTTAAAGCAGTCTTGGCTCCAGTTACATCTTTGGTTGGTTTGGACCTTATTTGGCAACAGTTTGAAGCTATAATCAGCAGTCAGATTCCTGGATTTGATTCTGCTAAAATACCGTAGGTGAAGCATTTATTTAGTTACTCATTTTTAAATGTTTTCTTTTGAAATAATTATAGATTCACAGGCAGTTGCAAAAAATGTACCCTAAGGTCCTTTGTACCTTCACCCAGTTTCCCCTAATGGTAAGAATAACACATACTTTTTTTTTTTTTTTTTTTGAGATGAGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGGTCACGGCTCACTGCAGCCTTGAACTCCTGGGCTCACATGATCTCCTACCTCAGCCTCTTGAGTAGCTGGGACTACAGGCATGCACCAGCATCCCAGCTAATAATACATCTTAGTATGTCTGTAGTACAATCAGTAAACTGACATTGGCATAATCCATGGAGCTTATTCAGATTTCACTAGTTCTGTAGGCACTCATGTGTGTTCAGTTATTTGCACTTTTAACACACGTGTAGATCCATGTAACCACCCCACACTCAAGATACAGAGCTGTTCATCTTCACCAAGGTGCTCCCTTGAGGGAAGCATTTATTTTCTAAGACAGATATCTTTTTATACCCCTGATTTAAAAGGGAAAGAAACGCAGGAGAATGTTGGGAAAGATGTTTGCTACTTGTTATCAGTGATTTATTTTACTTTGTGCTTTCTTGTTTGAGTTTTGTTTTTATAATGAACGTGTATCAGTTAGACAGAAGCAACAGAGCTTTTTTTTTTTCCATCTCTTGAAACCCATCACCCAGCTGCACCACTGCTGATGTTTTGGCAAACACAGACTGCTTTCTAGGTTGTTCTCCTGCCTTTCTCTCTGACTTTCTCCCTGCTCTCAGAAGACGTTCTCTGGAGGCAGTGCTGCATGGCCTGCTCCCATGGTGGTCTGGTGTTCAAACCTCACTCCGCAGGGGGCTCCCACAAGACGTGGGATAAGTGGTCTGCCAGCACTTGGCCTCCAGAGGCTCTTGAGAAGACCTATGTCAACATCTGCTGCTTGCCTTTTTGAAACCCAGCCTTTCTACACTGCCGCCTTCTCTGCCTGTATCCTTGGACGGACATGGATTTGGCCTCCTCTAACAAAACATCTGTGGTTTTAGATTGTCTGGTGTGCAGCTCCCTGCATGCATGCAGGACTCCCATGTCTTCCCTACCAATAATTCTGATCACTACACCTGTCACCTGCCATGGGCTTTCCCTACATCAGGGACTACACCAGGCATTTGACAGACATTGTCTCCGTGACCTAGGAGCGACCCACTGGGGCAACTGTTATCTTCTTAGACAAGGAAAGTGATGCTCAGAGAGGTTAAGCAACTTCCCTGCGTTACCAGCTGGTTTGTGGCAGACCAGGACTCAAGGCCAAAGTCATGTACTTAACCACTCACCTCCCCACCTCCTGCCAACACTGGCTGCCATTAACCCGGGATTGCTTGTGTCTTCTCATAG
Seq C2 exon
GTGAGCCCAGGCCAGGATGGGGGACTCCAGGGACCTTTGCCCTCACCTTGACTCCATAGGAGAGGTGACCAAAGAGGACTTGCTGCTCAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136878-USP20:NM_001110303:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)