RnoINT0161425 @ rn6
Intron Retention
Gene
ENSRNOG00000007710 | Usp20
Description
ubiquitin specific peptidase 20 [Source:RGD Symbol;Acc:1305621]
Coordinates
chr3:9829394-9831981:+
Coord C1 exon
chr3:9829394-9829490
Coord A exon
chr3:9829491-9831885
Coord C2 exon
chr3:9831886-9831981
Length
2395 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
GATTGCTCTGTTCCTTACAGGGG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GTGCCTTGTCGGAGGCTTTACTGCCGAGCCCCTTGTCAGCCGGTCACTGTCCACAGAAAATGTACACATCGGCCTCCTCTGTGTGCTGCTGAGTCAG
Seq A exon
GTAGGCCCACCTCCTCCTCTAAGATGCACCCCTCAAGTGCTGCCGGGAGGTGGGGTAGGGGGGAGTAGCAGGCTCTCCAGAAGGCCACCGGATTATACTTACAGCTGCTTTTGCTAATGACATGTGACTCTTGTGCTGGGCATTTGCCATTTGAGACGGAAGAGGGTGAAGCCTCAGGGGCCCCGGAACCCACTGAATAAAAGGTGGCGGGGTGGAGTTCACAGCGAAGCTTTGCCTTTGTTCGCTTTTTCTATGAATCAGAGAGCCAGGGCCAGCACAGTGGCTCTGCGGGCCAAGTCACCCGAGTTCCCACCTGGGGACCCACGCGGTGCAAGGAGAGAAACTCAAAGTGAGCAAGGGAGTGAGGCCTGACGCCTGTGGCCTGCCTTTCGGCCCTCACTCTGAGATGGCTGTTGGCAAGACTTGACACAGAAGAACCCTCTCTTGCTCTGTGCTGCTGTCACCATCACAGCAGCTGAGGTGACAGGAAGGAAGGGCTTTTACTGAGCTGTTCGGCATGGTGCCTGGCTGAGCCCGTGCGTGGGAGCTTCACCCAGGGTATCTGGCTGTCCACGAGGTTGCTCTTAGCTCCACGTGCGTCTTTGGTTGATCTGAACCTTTTCTGGCAGCGGGCTGAGCCAGAGTCAGTGTCAGCTTCCCAAACCGAGTCTGCTGAAATGGTGGAATACTGAGTGAGGCGGTATTCTGTGGGCTTTCTGTTATTTATTTTTAATTGTTTCTTTCTCCCTCCCCCTCCTTCCTTCCTTCCTTCTTTATTTCCCTCCCTTTCTTTTGAGACACTGTTTCTCTGTGTAGCCCTGGCTGGCCCTAGAACTCACTCTGTAGCCCAGGCTGGCCTCCAGTCGTAGTGATCATAGAGATTTACTGGCCTCTGTTTTATTTTGTTGGTTTTTCGGCACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAGAGATCCGCTGCCTCTTCCTCCAGTGCTGGGATTTAAGGCGTGCACTACTCTTGCCCAGCAAGCAGCCAGTGCTCTTAACTGCTGAGTCATTTCTCCAGCCCCTTTAACTCCTGATGATCCTCCTGCTTCCCAAGTGCTGGATTACACAGACCTGGCATCTCCTTTTAAAATAACCAGATTCCCAGAATTTTGCAAACATGTGCTAGAATGTCCTGTGTTCCCTTCCCAGCCTGCCCAGTGTAGCACATGTGCCAAGTGACCAGATCATAGCCTGGGTGGTCACCGTGCAACCCCTCCTTCAGGAAAGCATTGGTTTTTCCCATATGATTTCCCTTTTTCTCTCCTTTTTTTCTTTAAATGTATTTATTTTATGTATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGACCTCATTACAGATGGTTGTGAGCCACTGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGCAGTCAGTGCTCTTAACCTCTGAGCCATCTCTCCAGCCCTGGCTCTTTCCTTTTCTGATTTAAACACAAAGAAACAAAGGACTGGAGGTTGAGAGGGGAGACAGTATTTGGGATGAAAATAATTTAGGAAAAAGAATAAACAGAAGAACATCACATCTGTCAGATGTGGAGGGACTTCGCTACTCTGCACTAGGACTTGTAGAATATCCCAGTTTGCTTTTCTCATGAGTGTCACTTAAACTGAAGCAGCAAAGTTTTTTCTATCCTTTGACATCTGTCTGTCACCCAGATCCCCTGCTGGTGACACTTTGGTGACCTCTTTCACCCTGCTTCCTGGACAAGTAGTCTGTCAGTGCTCAGCCACTTCAGTCATTGTCCACAGAGGTTCCTGAAGGCAGTGCACTTTGGTATGCGACCTATAGTTATGATTCTTCTGAGACTGTGGCTTCAGGACCCTCAGACTCCCTGACCAGAGAAGGCAGCATGGAGAGTCAACCATACCTCTGCCTGTCCACTTGGTGGAGTTGACCTCTTTCTAAAACACCTGAATCCCAGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGTCTAGCAAGGCCCTGGGTTTGGTTCTCAGCTCTGGAAAAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAAAAAAACACCTGAATCCCACCTCCCGCCCACATCTGGAAAAGTGGTTTGGAGTTCCTGAGGGATGGGCAGGACTCCAATGTCTCTCCACCAGCGAGTCTAAGCCTCACACCTAGCATGGTCCAGTACATTGTCTGCTGAGCCGAGTCCAGCTCTGACACCCTTTACCCTTGTGGACCCTCAGACCAAGCCAACCATGCCATGCCAGGAACCTCTCATCCCCTGTGGTCTCATCAAAACGGGCTGCTGTTAACTTAGGATTGCTCTGTTCCTTACAG
Seq C2 exon
GGGAGGCTGGCCAGAATGGGGGACGCCAGAGACATCTGCCCTCACCTGGACTCCATAGGGGAGGTGACCAAAGAGGACTTGCTGCTTAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007710:ENSRNOT00000010786:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.012
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]