HsaINT0178683 @ hg38
Intron Retention
Gene
ENSG00000136878 | USP20
Description
ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
Coordinates
chr9:129849813-129852636:+
Coord C1 exon
chr9:129849813-129849924
Coord A exon
chr9:129849925-129852539
Coord C2 exon
chr9:129852540-129852636
Length
2615 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TTGCTTGTGTCTTCTCATAGGTG
3' ss Score
10.62
Exon sequences
Seq C1 exon
GCTCCTTGCCAGAGGCCTCCACTCACTCCAGACCCCTATAGCCCGTCGCTGTCAGCTGTCAACAAAGGATGCGAATGCTGGCCGCTTCCTGTGGGCTTCGTGTCACCCAGAG
Seq A exon
GTAAGCCCATGGCCTCCTCTCGGGTCCCTTCAACACGGACTGAGGAGGACACATGGATTTTTCTCTTTAGATGAAAGAATGGAATTGTGATTATGGGGTTTTTTTTTTTAAGTCTTTATCTCTTAGAAAAATACAGATGGAATGTGATCGCCTGTGTGTCTGGGACTTGCTACAAAAGCAAGAGGAAGCAGGAGGTTGAGATGAAGCAAGATTGGCCATGAGTTGTTAATTGATGAGTCTAGGTACATGGAAACATGGAAGTGCGTTATATAGTTTGGTCTACTTTGTTTTTTCCTTTTTTTTCTTTATGCTCATCTTTAATGTGACGGTAAGTTCTGCCTGCTTTTCACATTTACATTTTCTATAAGTTAGAAAGCAACTGAGCGGGCCCTTAGGATCTGACCCACTTGAGGTTCAGCTCTAGCGCCAACATTCCTATGAGACCTTAGACAAGAAGGAGCCTCTGTTCCTTAGTCTGTGAAATGGGGCTGATCACAGCTGCCTCAACGATTGCTGGAAGAGTTTTTCATAAACGAATGCACAAAAAGCACTTGGTTTGGTATCTGACACCTCATGAGTTTTAGTAACTCACGTTCTGAATGAGAATCTGGCCAGTTGACCCTGGCTGACCATTTGGGACAGGGAGGGGCACGTAAGGAGGAGTCTGGGGGTCCACCTCTCAGATCAGGTGGGCACACATGCAGCTTCTGCCTTTGTTTTTTGTTTTTTGTGTGTGTGTGTGTGTTTTGGGATGGAGTTGCGCTCTTGTTGCCTAGGCTGCGGTTCAATGGCACGATGTTGGCTTGCCACAACTTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTATAGGCTTGTGCATCATGCCCGGCTAATTTTGTATTTTTAGTAGAGACGGGATTTCTCCATGTTGGTCAGGCTGGTCTTGATCTCCTGACCTCAGGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGCATGAGCCACCGCACCCAGTCTTTTGTTTTGTTTTTAAGACTCATGCAGTCACAGAGGCTTCTGCCTTTGGTTAAAGCAGTCTTGGCTCCAGTTACATCTTTGGTTGGTTTGGACCTTATTTGGCAACAGTTTGAAGCTATAATCAGCAGTCAGATTCCTGGATTTGATTCTGCTAAAATACCGTAGGTGAAGCATTTATTTAGTTACTCATTTTTAAATGTTTTCTTTTGAAATAATTATAGATTCACAGGCAGTTGCAAAAAATGTACCCTAAGGTCCTTTGTACCTTCACCCAGTTTCCCCTAATGGTAAGAATAACACATACTTTTTTTTTTTTTTTTTTTGAGATGAGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCATGGTCACGGCTCACTGCAGCCTTGAACTCCTGGGCTCACATGATCTCCTACCTCAGCCTCTTGAGTAGCTGGGACTACAGGCATGCACCAGCATCCCAGCTAATAATACATCTTAGTATGTCTGTAGTACAATCAGTAAACTGACATTGGCATAATCCATGGAGCTTATTCAGATTTCACTAGTTCTGTAGGCACTCATGTGTGTTCAGTTATTTGCACTTTTAACACACGTGTAGATCCATGTAACCACCCCACACTCAAGATACAGAGCTGTTCATCTTCACCAAGGTGCTCCCTTGAGGGAAGCATTTATTTTCTAAGACAGATATCTTTTTATACCCCTGATTTAAAAGGGAAAGAAACGCAGGAGAATGTTGGGAAAGATGTTTGCTACTTGTTATCAGTGATTTATTTTACTTTGTGCTTTCTTGTTTGAGTTTTGTTTTTATAATGAACGTGTATCAGTTAGACAGAAGCAACAGAGCTTTTTTTTTTTCCATCTCTTGAAACCCATCACCCAGCTGCACCACTGCTGATGTTTTGGCAAACACAGACTGCTTTCTAGGTTGTTCTCCTGCCTTTCTCTCTGACTTTCTCCCTGCTCTCAGAAGACGTTCTCTGGAGGCAGTGCTGCATGGCCTGCTCCCATGGTGGTCTGGTGTTCAAACCTCACTCCGCAGGGGGCTCCCACAAGACGTGGGATAAGTGGTCTGCCAGCACTTGGCCTCCAGAGGCTCTTGAGAAGACCTATGTCAACATCTGCTGCTTGCCTTTTTGAAACCCAGCCTTTCTACACTGCCGCCTTCTCTGCCTGTATCCTTGGACGGACATGGATTTGGCCTCCTCTAACAAAACATCTGTGGTTTTAGATTGTCTGGTGTGCAGCTCCCTGCATGCATGCAGGACTCCCATGTCTTCCCTACCAATAATTCTGATCACTACACCTGTCACCTGCCATGGGCTTTCCCTACATCAGGGACTACACCAGGCATTTGACAGACATTGTCTCCGTGACCTAGGAGCGACCCACTGGGGCAACTGTTATCTTCTTAGACAAGGAAAGTGATGCTCAGAGAGGTTAAGCAACTTCCCTGCGTTACCAGCTGGTTTGTGGCAGACCAGGACTCAAGGCCAAAGTCATGTACTTAACCACTCACCTCCCCACCTCCTGCCAACACTGGCTGCCATTAACCCGGGATTGCTTGTGTCTTCTCATAG
Seq C2 exon
GTGAGCCCAGGCCAGGATGGGGGACTCCAGGGACCTTTGCCCTCACCTTGACTCCATAGGAGAGGTGACCAAAGAGGACTTGCTGCTCAAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136878:ENST00000372429:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains