Special

GgaINT0036553 @ galGal4

Intron Retention

Gene
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17880390-17884909:+
Coord C1 exon
chr8:17880390-17880675
Coord A exon
chr8:17880676-17884770
Coord C2 exon
chr8:17884771-17884909
Length
4095 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TTCTCACTCCTGTTGAAAAGTGC
3' ss Score
1.86
Exon sequences
Seq C1 exon
ACTGCGGCCGCCATCTTTGTGCGGGGCAGCGCTCACGTGAGCGGCGGCGATGCTCCTCGCCGCCATCTTTGTGCGGGGCGCGCCCGGAGCGGCTGCATCCGGTGGGTGCCCGTCCGCTTGTGCGAGGGGGCGCTGTGCCCGCGGCCCGGCTGCGGCGGCGTTGCGGTCACCTTCTTCGCCGCGGCCTGCGGGGTGGGGAAGCGCCGTCCCCGGAGCCTGAGGCACGTCCTCAGCGGGGTGGCCGCGGCCCAGCCCGGCTCCTTAGTAGGCTCGGTGCACTCTCACG
Seq A exon
GTAAGAGGAGGAACGGGGGCGGTCTCGGCGCTCTGAGGGGATAGGAGACGGGCGGGCGGTGGCTGCGTCCGGACTCGGAGTGTGAGGCGGCCCGGCCTCAGCTATCCCTGTGCCCGTGCACCCAGCAGGCCGGGCCGGGCCTTCTCTTCCCTTTCCTGCGGGCTCGGTGCTCCGGGGGCTGTCTGCTGGGTGGCGTGGGGAAAGAAGGGAATGGGCCGGCTGTAGGCTTTAGAAGGCAACGTAATGTGAGTATTGTGTAACCTTATAAGCGGGTTAACTCTCAGTTCGAGCTTTTTTTAATGTCCTTTCGACGGCAGTATTCACTTCATCAGTTACGACTTATAATTTTCAGTGTAACACTTGCACTCTGTCATTAGTTCTCCTGCTTTCAAGCTTAATTCTAAAGATACACTTCCCAAAGAAAAAATGACTTTTTTTAACTGTTGTAGGTGGTATTGTAGAATCACGTTAATCAGGATCCTAAGAATCACGTTGAAAAGGAGAATGATGTTAATATATACGTATTCAGATCCTTGGTTAAATTGTAGGCCATAACCATAGGCGTGATAGTGCAAATGTGAGTGCAGGCACGCATTTTTCTTTCTTACATTTCAGATCCGGTATTGGTTGTGTATTACAAAACAATTTCTTCTCTGAAGGAGCAGTGATGCAGTGGCACAGCTGCCCAGAGAGATGGTGGGGCCACCGGCCCTGGAGGTGTTCCAGATCCACTGAATCTGGAGGGACACAGTTTAATGGGCAGTATTGGTGGTAGATTACAGTCTGACATGATGATCTTAGAGGTCTTTTCCAACCTTAATGATTTTATGAAACAATACAAGGGAAAGCATTTAATGAAAGTGACTCAGTAACACTGTGTCTTGCTTGGTGAGCAGCTCTTGTTGCCTGGATCCAGGGACAAGGTATCAAAAACATGGACTGGATAACAGAGTAGAAAGGAATAGGGTGTGAAACTAAGGAGTGGTCTTCCTCTGGTCCTTTTGATTAGATTCGTTTTATTACCGAACTTTTTCAAGTTTAATAAGAAATAAGATTTTTTGGTTTTGTTTTGCATACATTTTGTTACAAAGTAATAGGTTGTCACAGAGTTCTTTAGAATGTTGATTAAAAAACATACATCTTAAACATCTGCATATATACATCTGAGGCATAGGGTGTGTGCAGTTTGCAGTGAATGTTGGTGTTGTGTCTTTTTTTCTGAGTGTGAAGAATATTTGTGTAGTAATTAATTATTGAAAGCTACAGAGCTCTTTACTGTTTAAGCAATTAAACACTCATACAGAATCGCGTCCTTGCACCACTCTTTCGTGGTTATTGATATTGAAAGAGAAAATAAACATGACTGTTCCACTGTGTCAGTAGAGAAATAACCCCAAGTGTAGATGGAGAACCCTGAGCTTGGTGCTAACTGGCTAAATAGGCTGTTATTCAGAGCTGTATGGTCAAAGTAATTAAAGCCTATAATAAAAATACAATTACTGCTTGAGGCAGCTGTTGTCTTCAAAACAATCCCTTTGTTCTTAGTCTTCCACCAACATTCCACCATTGAGTTCTCTTTTTGTTGTGTTTACAAAATTTAGAGTTTATTTGGCTGGGATTTATGTAAGATTAGCTTTTTATAATTATCTTTTGATTTCTCAAGTTAGTTCATTTAGATGTGTTCATAGGGCAAGCATTCAGGTGTGTGGGAGCAGCCCTGCAAAGCGATCTGATTAAAGGGCTCTGGAGACATCAACTGAACCAAAAATATGTTTATTTCAACATCTCTTGTAATGGTAACTACCACGATTAGATGAATGGAAACATTGATTTTTAGCTTCAAATAAAAAATTACAAACAAATAGAAACAACTATTTAAAATCTACTATGTTTTTTACATAATGCTTTGGTAAGCTTTCAAGATTACTTGAACTCTTAGGGTTTAATCTTTTTTCTGTGTGTATATGACAGGCCTTCTCTGGTAGGCACCACACAAGTCTTATAATGGCATGGAATTGTGCTGAATAATGAATAGCTTGTTGGTAGTGATTCTTTAAAATACTGTTCGTGCTTTTCTGATGGCTTACATGAATTAGATTTTCTTGTTTGTTTGTTTCTTTGTGTTGGTTTTGCAGTTCCAATGGTGAACAATAGCTATTAAATAGATATCTGGTGGTATGAGGTGAAGTTCATCCTTCATTCATTGCTTTTTATTGGTTGGAATATTTCATTGAGAAATATACTTTTGTAAAGTAATTAAGCCTAAGGTTTTAGTAAGCCATTATGCTAAGCCTTCTAAAGCGTTTGTGTTAAATCAGCTTTAATTCACCATGACGTCTTTTAAGATAAGGTTTTATTTGAAACTCACTCATCCATTTTTAACATTTGTGTAGACACTGCAAAATGTACAAGATGAAATGTGCATAAATCTTTCTGTTTCCTTTCTGGAAAGGAACTTTACAGTTCAAACCAGAATTTCCAGTATGATGAAGTCGATGAGTTTTTGCCTGAAAAACTGTGGTTTTTGTATTTGTAGTCTTTCAGCAATACTGTGAATAGACACAAGCTGAGAAAATATTTTTCTATCCTCAACTTATATTCAATAATAATGCTCTTTAAAGGCTCTTTCATTGACTGGGGAGAGAATCTAGGCCTAATTTGGTCAAAAATCCCGAATTATTTACTGCTGTGTTTTCTCTAGCCTTGTGATCTTACATCTTAGGTATTTTGTTGTGAAGCTGTTGGCATGCAAAAAGATGGAAGGATACATGTGCACGCTTGAATATGTGTATACATGTCATATATATAAAAAAATATTTCTATTAAAATATTTTATACATTCATATGCAGATACATACATACGTATATATATATGTATATGGATGAGACATATCTTCATATGCCTTACATTATTTTTATAGATATAATATACAGTTGCAATATATAAAGCATTTATATAGTATGGTAAGAATGCACATTAAAAAAATGTCTTCAGTAATCAGAGGAAACTGAAATGACAAATGTCTTATTACAGGACAGTAGAAATGAAGACCAAGTCAAAGATAAAAAGCTGGAAGTTTACTAGAAAGTGTGTATGAGATGCTTACCAGACAAAGTTTTGTTCCCAATCTCCGCTGTCAGAGCCTTGGATTACCTAGTACTGAAAGCAGTGATTGGTCACACAGGTGAAGAAACAGATCTAGAGCTGCCAAAGCAAACAAGAAGTGGAAAGACAATGCCAAAGGTTGCAAACAGTTAGAATAAAGTGCATTGTTGAATTAGGTTGGAAGTTTGGTTGCATGCCTTGGTAAAGGAAAGCAAGATTGATGGGATAATTGGGCAATGGAAGTTTAAGACTTCTTGGGCTTAAGACATCAGGGCATCAATATCAATTGTTTAAGTGGCAAAACTGGAGTGTGAGTTAACTGAATACTTATGTGAACATAATGTAGCCACATTCAGTTTTTTAAATTGAAATAATAATGGAAAAGTGAATGTATTTAGCATTTCTTATTTCTGATGAGTTTCTGAGTCTGCACCAGGGTTGTTTGATGGATAGGAAGAGCTCAAGCAAGTGAGAAGTTTGTTGGGCAGTCAGTACTACATGTGAGTTAAAAGTTTCAGCTTGCTTTTGTTATATCATGTGTCTGCTATCTAGTATGTGTCTTTATAAATAAATAAAAGCAAGATAAAGTTTCGTTCTGCCTTGACAAGCAGGTCACGTGGCTTCAGCACACTTCAGTACTGTGTGATAACACTTCCCAGAACATACAGTCCTGGGTAGGCTTGAAAGCTGTCACTTTCTTTTTTTGCCTTTTGAGTGCCATGGTAGAAGCCAGGAAGATGAGTAGTTCAGCCAGACTGGCTTTGATCCACTTGTTTAGGTTTATGCCCTAAAACTCAGAAAAATAGAGGATTGAGTTTTTTAGAACTCAGCTGTATTTAATTTGGACTGCTGATTCCCTTACTTCTAATAAGTTATTTATTTTAACATTTTTAGAAGGTACATTCTAGTAAAGATTGTATATTAGATTTCTACTGTTGCTGCATACTGTAAGGAATTGAATTTTACTCATTCTCACTCCTGTTGAAAAG
Seq C2 exon
TGCCTTCTTGGTCTCGGAAATCCCAGCTTCTGGATCTTGGCAAACAAAGCATCTGAAAATGTCATCACTCAGCAGCAATTGCCCACACCTGGAATCGGTTGGTGAGATAACAAAAGAGGAATTGATACAGAAGTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact

5' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=0.019
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]