GgaINT0036553 @ galGal3
Intron Retention
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19681966-19686288:+
Coord C1 exon
chr8:19681966-19682054
Coord A exon
chr8:19682055-19686149
Coord C2 exon
chr8:19686150-19686288
Length
4095 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TTCTCACTCCTGTTGAAAAGTGC
3' ss Score
1.86
Exon sequences
Seq C1 exon
GAAGCGCCGTCCCCGGAGCCTGAGGCACGTCCTCAGCGGGGTGGCCGCGGCCCAGCCCGGCTCCTTAGTAGGCTCGGTGCACTCTCACG
Seq A exon
GTAAGAGGAGGAACGGGGGCGGTCTCGGCGCTCTGAGGGGATAGGAGACGGGCGGGCGGTGGCTGCGTCCGGACTCGGAGTGTGAGGCGGCCCGGCCTCAGCTATCCCTGTGCCCGTGCACCCAGCAGGCCGGGCCGGGCCTTCTCTTCCCTTTCCTGCGGGCTCGGTGCTCCGGGGGCTGTCTGCTGGGTGGCGTGGGGAAAGAAGGGAATGGGCCGGCTGTAGGCTTTAGAAGGCAACGTAATGTGAGTATTGTGTAACCTTATAAGCGGGTTAACTCTCAGTTCGAGCTTTTTTTAATGTCCTTTCGACGGCAGTATTCACTTCATCAGTTACGACTTATAATTTTCAGTGTAACACTTGCACTCTGTCATTAGTTCTCCTGCTTTCAAGCTTAATTCTAAAGATACACTTCCCAAAGAAAAAATGACTTTTTTTAACTGTTGTAGGTGGTATTGTAGAATCACGTTAATCAGGATCCTAAGAATCACGTTGAAAAGGAGAATGATGTTAATATATACGTATTCAGATCCTTGGTTAAATTGTAGGCCATAACCATAGGCGTGATAGTGCAAATGTGAGTGCAGGCACGCATTTTTCTTTCTTACATTTCAGATCCGGTATTGGTTGTGTATTACAAAACAATTTCTTCTCTGAAGGAGCAGTGATGCAGTGGCACAGCTGCCCAGAGAGATGGTGGGGCCACCGGCCCTGGAGGTGTTCCAGATCCACTGAATCTGGAGGGACACAGTTTAATGGGCAGTATTGGTGGTAGATTACAGTCTGACATGATGATCTTAGAGGTCTTTTCCAACCTTAATGATTTTATGAAACAATACAAGGGAAAGCATTTAATGAAAGTGACTCAGTAACACTGTGTCTTGCTTGGTGAGCAGCTCTTGTTGCCTGGATCCAGGGACAAGGTATCAAAAACATGGACTGGATAACAGAGTAGAAAGGAATAGGGTGTGAAACTAAGGAGTGGTCTTCCTCTGGTCCTTTTGATTAGATTCGTTTTATTACCGAACTTTTTCAAGTTTAATAAGAAATAAGATTTTTTGGTTTTGTTTTGCATACATTTTGTTACAAAGTAATAGGTTGTCACAGAGTTCTTTAGAATGTTGATTAAAAAACATACATCTTAAACATCTGCATATATACATCTGAGGCATAGGGTGTGTGCAGTTTGCAGTGAATGTTGGTGTTGTGTCTTTTTTTCTGAGTGTGAAGAATATTTGTGTAGTAATTAATTATTGAAAGCTACAGAGCTCTTTACTGTTTAAGCAATTAAACACTCATACAGAATCGCGTCCTTGCACCACTCTTTCGTGGTTATTGATATTGAAAGAGAAAATAAACATGACTGTTCCACTGTGTCAGTAGAGAAATAACCCCAAGTGTAGATGGAGAACCCTGAGCTTGGTGCTAACTGGCTAAATAGGCTGTTATTCAGAGCTGTATGGTCAAAGTAATTAAAGCCTATAATAAAAATACAATTACTGCTTGAGGCAGCTGTTGTCTTCAAAACAATCCCTTTGTTCTTAGTCTTCCACCAACATTCCACCATTGAGTTCTCTTTTTGTTGTGTTTACAAAATTTAGAGTTTATTTGGCTGGGATTTATGTAAGATTAGCTTTTTATAATTATCTTTTGATTTCTCAAGTTAGTTCATTTAGATGTGTTCATAGGGCAAGCATTCAGGTGTGTGGGAGCAGCCCTGCAAAGCGATCTGATTAAAGGGCTCTGGAGACATCAACTGAACCAAAAATATGTTTATTTCAACATCTCTTGTAATGGTAACTACCACGATTAGATGAATGGAAACATTGATTTTTAGCTTCAAATAAAAAATTACAAACAAATAGAAACAACTATTTAAAATCTACTATGTTTTTTACATAATGCTTTGGTAAGCTTTCAAGATTACTTGAACTCTTAGGGTTTAATCTTTTTTCTGTGTGTATATGACAGGCCTTCTCTGGTAGGCACCACACAAGTCTTATAATGGCATGGAATTGTGCTGAATAATGAATAGCTTGTTGGTAGTGATTCTTTAAAATACTGTTCGTGCTTTTCTGATGGCTTACATGAATTAGATTTTCTTGTTTGTTTGTTTCTTTGTGTTGGTTTTGCAGTTCCAATGGTGAACAATAGCTATTAAATAGATATCTGGTGGTATGAGGTGAAGTTCATCCTTCATTCATTGCTTTTTATTGGTTGGAATATTTCATTGAGAAATATACTTTTGTAAAGTAATTAAGCCTAAGGTTTTAGTAAGCCATTATGCTAAGCCTTCTAAAGCGTTTGTGTTAAATCAGCTTTAATTCACCATGACGTCTTTTAAGATAAGGTTTTATTTGAAACTCACTCATCCATTTTTAACATTTGTGTAGACACTGCAAAATGTACAAGATGAAATGTGCATAAATCTTTCTGTTTCCTTTCTGGAAAGGAACTTTACAGTTCAAACCAGAATTTCCAGTATGATGAAGTCGATGAGTTTTTGCCTGAAAAACTGTGGTTTTTGTATTTGTAGTCTTTCAGCAATACTGTGAATAGACACAAGCTGAGAAAATATTTTTCTATCCTCAACTTATATTCAATAATAATGCTCTTTAAAGGCTCTTTCATTGACTGGGGAGAGAATCTAGGCCTAATTTGGTCAAAAATCCCGAATTATTTACTGCTGTGTTTTCTCTAGCCTTGTGATCTTACATCTTAGGTATTTTGTTGTGAAGCTGTTGGCATGCAAAAAGATGGAAGGATACATGTGCACGCTTGAATATGTGTATACATGTCATATATATAAAAAAATATTTCTATTAAAATATTTTATACATTCATATGCAGATACATACATACGTATATATATATGTATATGGATGAGACATATCTTCATATGCCTTACATTATTTTTATAGATATAATATACAGTTGCAATATATAAAGCATTTATATAGTATGGTAAGAATGCACATTAAAAAAATGTCTTCAGTAATCAGAGGAAACTGAAATGACAAATGTCTTATTACAGGACAGTAGAAATGAAGACCAAGTCAAAGATAAAAAGCTGGAAGTTTACTAGAAAGTGTGTATGAGATGCTTACCAGACAAAGTTTTGTTCCCAATCTCCGCTGTCAGAGCCTTGGATTACCTAGTACTGAAAGCAGTGATTGGTCACACAGGTGAAGAAACAGATCTAGAGCTGCCAAAGCAAACAAGAAGTGGAAAGACAATGCCAAAGGTTGCAAACAGTTAGAATAAAGTGCATTGTTGAATTAGGTTGGAAGTTTGGTTGCATGCCTTGGTAAAGGAAAGCAAGATTGATGGGATAATTGGGCAATGGAAGTTTAAGACTTCTTGGGCTTAAGACATCAGGGCATCAATATCAATTGTTTAAGTGGCAAAACTGGAGTGTGAGTTAACTGAATACTTATGTGAACATAATGTAGCCACATTCAGTTTTTTAAATTGAAATAATAATGGAAAAGTGAATGTATTTAGCATTTCTTATTTCTGATGAGTTTCTGAGTCTGCACCAGGGTTGTTTGATGGATAGGAAGAGCTCAAGCAAGTGAGAAGTTTGTTGGGCAGTCAGTACTACATGTGAGTTAAAAGTTTCAGCTTGCTTTTGTTATATCATGTGTCTGCTATCTAGTATGTGTCTTTATAAATAAATAAAAGCAAGATAAAGTTTCGTTCTGCCTTGACAAGCAGGTCACGTGGCTTCAGCACACTTCAGTACTGTGTGATAACACTTCCCAGAACATACAGTCCTGGGTAGGCTTGAAAGCTGTCACTTTCTTTTTTTGCCTTTTGAGTGCCATGGTAGAAGCCAGGAAGATGAGTAGTTCAGCCAGACTGGCTTTGATCCACTTGTTTAGGTTTATGCCCTAAAACTCAGAAAAATAGAGGATTGAGTTTTTTAGAACTCAGCTGTATTTAATTTGGACTGCTGATTCCCTTACTTCTAATAAGTTATTTATTTTAACATTTTTAGAAGGTACATTCTAGTAAAGATTGTATATTAGATTTCTACTGTTGCTGCATACTGTAAGGAATTGAATTTTACTCATTCTCACTCCTGTTGAAAAG
Seq C2 exon
TGCCTTCTTGGTCTCGGAAATCCCAGCTTCTGGATCTTGGCAAACAAAGCATCTGAAAATGTCATCACTCAGCAGCAATTGCCCACACCTGGAATCGGTTGGTGAGATAACAAAAGAGGAATTGATACAGAAGTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]