GgaEX1062577 @ galGal4
Exon Skipping
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17880390-17884909:+
Coord C1 exon
chr8:17880390-17880675
Coord A exon
chr8:17883710-17883919
Coord C2 exon
chr8:17884771-17884909
Length
210 bp
Sequences
Splice sites
3' ss Seq
TGACAAATGTCTTATTACAGGAC
3' ss Score
7.75
5' ss Seq
AAGGTTGCA
5' ss Score
-2.83
Exon sequences
Seq C1 exon
ACTGCGGCCGCCATCTTTGTGCGGGGCAGCGCTCACGTGAGCGGCGGCGATGCTCCTCGCCGCCATCTTTGTGCGGGGCGCGCCCGGAGCGGCTGCATCCGGTGGGTGCCCGTCCGCTTGTGCGAGGGGGCGCTGTGCCCGCGGCCCGGCTGCGGCGGCGTTGCGGTCACCTTCTTCGCCGCGGCCTGCGGGGTGGGGAAGCGCCGTCCCCGGAGCCTGAGGCACGTCCTCAGCGGGGTGGCCGCGGCCCAGCCCGGCTCCTTAGTAGGCTCGGTGCACTCTCACG
Seq A exon
GACAGTAGAAATGAAGACCAAGTCAAAGATAAAAAGCTGGAAGTTTACTAGAAAGTGTGTATGAGATGCTTACCAGACAAAGTTTTGTTCCCAATCTCCGCTGTCAGAGCCTTGGATTACCTAGTACTGAAAGCAGTGATTGGTCACACAGGTGAAGAAACAGATCTAGAGCTGCCAAAGCAAACAAGAAGTGGAAAGACAATGCCAAAG
Seq C2 exon
TGCCTTCTTGGTCTCGGAAATCCCAGCTTCTGGATCTTGGCAAACAAAGCATCTGAAAATGTCATCACTCAGCAGCAATTGCCCACACCTGGAATCGGTTGGTGAGATAACAAAAGAGGAATTGATACAGAAGTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.019
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCTTTGTGCGGGGCAG
R:
GCTGGGATTTCCGAGACCAAG
Band lengths:
303-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]