GgaEX0000097 @ galGal4
Exon Skipping
Gene
ENSGALG00000000182 | FGA
Description
fibrinogen alpha chain [Source:HGNC Symbol;Acc:HGNC:3661]
Coordinates
chr16:20337-21752:+
Coord C1 exon
chr16:20337-20426
Coord A exon
chr16:20627-20914
Coord C2 exon
chr16:21451-21752
Length
288 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCATGACTGTTGCAGCCC
3' ss Score
6.72
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCTGGGTGACACCAGTGAGCCTCCACTAGAATGGGGGAACCTGTATGACATGGAGGTGACTGAGCCCCAGGGGGCCATGGCCAAAGCAG
Seq A exon
CCCCATCAGAGGAGGAACCACCACAGCGGCCCCGCCTGGGCATGCTCACAGTCTCCCACGTGACTCCTAGCTCCATCCAGCTGGAATGGAGTGTCCTTGAGGGCACCTTTGACTCCTTCACGGTGCAGTACAGGGATGCACAAGGCCAGCCACAGGCACTTGCTGTCGATGGTGGGTCACGCACAGTGACTGTGCCCGGGCTGTCACCGTCCCGCCACTACAAGTTCAACCTGTATGGGGTGTGGGGGCGGAAGCGCATTGGTTTCATCTCCACTGATGCTGTCACAG
Seq C2 exon
CAAAACCAAAGGAAGAACTGCCATCCCAACCACGCCTGGGTGAGCTGACGGCCTCCCACGTCAGCCCCGACTCCGTCCAGCTGGAATGGAGCATCCCCGAGGGCTCCTTTGACTCCTTCACGGTGCAGTACAAGGATGCACAAGGCCAGCCACAGGTGGTGCCCGTGGACGGTGGGTTGCGCACAGTGACCGTGCCCGGGCTGTCGCCGTCCCGCCGCTACAAGTTCAACCTGTATGGGGTGTGGGGGCGGAAGCGTCTGGGCCCCATGTCCACTGATGCTGTCACAGGTGAGCATGCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000182_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.742 A=0.351 C2=0.465
Domain overlap (PFAM):
C1:
NO
A:
PF0004116=fn3=WD(100=81.4)
C2:
PF0004116=fn3=WD(100=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCCTCCACTAGAATGGGG
R:
ACAGGTTGAACTTGTAGCGGC
Band lengths:
308-596
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]