MmuEX6077176 @ mm9
Exon Skipping
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34821866-34825877:+
Coord C1 exon
chr17:34821866-34822156
Coord A exon
chr17:34822533-34822823
Coord C2 exon
chr17:34825545-34825877
Length
291 bp
Sequences
Splice sites
3' ss Seq
CGCTTCTCCACTACTTACAGCTG
3' ss Score
7.44
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGATTCAGAGTGACCCTGACCCAGGATCCCCACCCCGCCTGGGAGAGCTATGGGTGACAGACCCCACTCCACACTCATTGCACCTCTCCTGGACTGTTCTCGGAGGCCAGTTCGACTCCTTCGTGGTCCAGTACAGAGACAAGGAAGGCCAGCCCCGTGTGGTACCTGTGGAGGGGCCTGATCGCTCAGTGGTGATCTCCCCACTGGACCCCAATCGCAAGTACAGGTTCACTCTGTTTGGGATTGCCAATAAGAAGCGGTACGGGCCCCTTACTGCTGATGGCACTACTG
Seq A exon
CTGCAGAGACGAAAGAGGAGTCCTCAGAGCCGCCCCGCCTCGGCGAACTGACTGTGACTGGTGTGACCCCAGACTCCCTGCGCCTGTCCTGGACAGTGGCCCGGGGTCCCTTCGACTCCTTTGTAATCCTTTACAAGGATGCACAGGGCCAGCCCCAGAGTGTACCCATCGAAGGTGATGAGAATGAGGTCACTGTCCCCGGCCTGGAGTCCAACAGGAAGTATAAGATGAACCTCTACGGGCTTCGTGGCAGGCAGCGTGTGGGGCCGGTATCAGTGGTGGCCAAAACTG
Seq C2 exon
CCCCACCAGATGTTGTAGACCAGCCCCTCAGCCCCCCAGAGCCCAGCACAGAGGCCCCAGAGCCCCCCGAGAAGCCACTCCTGAGAGAGCTGATCGTGACAGACACCACACCCAACTCCCTGAGCCTCTCCTGGACAGTCTCCGAGGGACAGTTTGACCAGTTCGTGATCCAGTACAAGAACGGGGATGGGCAGCCCAAGGTGGTGCGGGTGCCAGGACACGAGGACCAGGTCACCATCTCCGGCCTGGAGCCAGACCACAAGTATAAGATGAACCTGTATGGCATCCATAGTGGCCAGCGTGTGGGCCCCGTGTCTGTTGTTGGTGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-'9-8,'9-7,10-8=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.398 A=0.520 C2=0.741
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=84.7)
A:
PF0004116=fn3=WD(100=83.7)
C2:
PF0004116=fn3=WD(100=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCCTGGACTGTTCTCG
R:
TCTCTCAGGAGTGGCTTCTCG
Band lengths:
298-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: