HsaEX6046430 @ hg19
Exon Skipping
Gene
ENSG00000168477 | TNXB
Description
tenascin XB [Source:HGNC Symbol;Acc:11976]
Coordinates
chr6:32046810-32050103:-
Coord C1 exon
chr6:32049813-32050103
Coord A exon
chr6:32049145-32049450
Coord C2 exon
chr6:32046810-32047142
Length
306 bp
Sequences
Splice sites
3' ss Seq
CTGGATCTCCTTGTTTACAGCTC
3' ss Score
7.36
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGCCTCAGAGTGACCCAAGTCCAGGGACTCCACCCCACCTGGGAAACCTGTGGGTGACAGACCCTACCCCAGATTCACTGCACCTCTCCTGGACTGTCCCTGAGGGCCAGTTTGACACCTTCATGGTCCAGTACAGGGACAGGGATGGACGGCCCCAGGTGGTACCTGTGGAAGGGCCCGAGCGTTCATTTGTTGTCTCCTCACTGGACCCTGACCACAAGTACAGATTCACTCTGTTTGGAATTGCGAACAAGAAGCGGTATGGCCCCCTCACGGCCGATGGCACCACTG
Seq A exon
CTCCAGAGAGGAAAGAGGAGCCCCCCCGCCCTGAGTTCCTGGAGCAGCCCCTCCTGGGGGAACTGACAGTGACCGGCGTGACCCCAGACTCCTTGCGTCTCTCATGGACAGTGGCCCAGGGCCCCTTCGACTCATTCATGGTCCAGTACAAGGATGCACAGGGGCAGCCCCAGGCAGTGCCTGTTGCGGGGGATGAGAATGAGGTTACTGTCCCCGGCCTGGATCCCGACCGGAAGTATAAGATGAACCTCTACGGGCTTCGTGGCAGGCAGCGTGTGGGGCCCGAGTCTGTGGTGGCCAAGACTG
Seq C2 exon
CTCCTCAGGAGGATGTGGACGAGACCCCCAGCCCCACAGAACTGGGCACGGAGGCCCCGGAGTCCCCCGAGGAGCCGCTCCTGGGGGAGCTGACAGTGACAGGATCCTCCCCTGATTCGCTGAGCCTCTTCTGGACCGTCCCCCAGGGCAGCTTCGACTCTTTCACCGTGCAGTACAAGGACAGGGATGGGCGGCCCCGGGCGGTGCGTGTTGGGGGCAAGGAGAGTGAGGTCACCGTGGGAGGCCTAGAGCCCGGGCACAAGTACAAGATGCACCTGTACGGCCTCCACGAGGGGCAGCGCGTGGGCCCGGTGTCCGCCGTGGGCGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000168477-'12-15,'12-13,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.490 A=0.680 C2=0.736
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=83.7)
A:
PF0004116=fn3=WD(100=78.6)
C2:
PF0004116=fn3=WD(100=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCTGGACTGTCCCTGAG
R:
CCAGAAGAGGCTCAGCGAATC
Band lengths:
342-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)