MmuEX6077176 @ mm10
Exon Skipping
Gene
ENSMUSG00000033327 | Tnxb
Description
tenascin XB [Source:MGI Symbol;Acc:MGI:1932137]
Coordinates
chr17:34684921-34688932:+
Coord C1 exon
chr17:34684921-34685211
Coord A exon
chr17:34685588-34685878
Coord C2 exon
chr17:34688600-34688932
Length
291 bp
Sequences
Splice sites
3' ss Seq
CGCTTCTCCACTACTTACAGCTG
3' ss Score
7.44
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TGATTCAGAGTGACCCTGACCCAGGATCCCCACCCCGCCTGGGAGAGCTATGGGTGACAGACCCCACTCCACACTCATTGCACCTCTCCTGGACTGTTCTCGGAGGCCAGTTCGACTCCTTCGTGGTCCAGTACAGAGACAAGGAAGGCCAGCCCCGTGTGGTACCTGTGGAGGGGCCTGATCGCTCAGTGGTGATCTCCCCACTGGACCCCAATCGCAAGTACAGGTTCACTCTGTTTGGGATTGCCAATAAGAAGCGGTACGGGCCCCTTACTGCTGATGGCACTACTG
Seq A exon
CTGCAGAGACGAAAGAGGAGTCCTCAGAGCCGCCCCGCCTCGGCGAACTGACTGTGACTGGTGTGACCCCAGACTCCCTGCGCCTGTCCTGGACAGTGGCCCGGGGTCCCTTCGACTCCTTTGTAATCCTTTACAAGGATGCACAGGGCCAGCCCCAGAGTGTACCCATCGAAGGTGATGAGAATGAGGTCACTGTCCCCGGCCTGGAGTCCAACAGGAAGTATAAGATGAACCTCTACGGGCTTCGTGGCAGGCAGCGTGTGGGGCCGGTATCAGTGGTGGCCAAAACTG
Seq C2 exon
CCCCACCAGATGTTGTAGACCAGCCCCTCAGCCCCCCAGAGCCCAGCACAGAGGCCCCAGAGCCCCCCGAGAAGCCACTCCTGAGAGAGCTGATCGTGACAGACACCACACCCAACTCCCTGAGCCTCTCCTGGACAGTCTCCGAGGGACAGTTTGACCAGTTCGTGATCCAGTACAAGAACGGGGATGGGCAGCCCAAGGTGGTGCGGGTGCCAGGACACGAGGACCAGGTCACCATCTCCGGCCTGGAGCCAGACCACAAGTATAAGATGAACCTGTATGGCATCCATAGTGGCCAGCGTGTGGGCCCCGTGTCTGTTGTTGGTGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033327-'19-9,'19-8,21-9
Average complexity
S
Mappability confidence:
78%=100=50%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.398 A=0.520 C2=0.741
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=84.7)
A:
PF0004116=fn3=WD(100=83.7)
C2:
PF0004116=fn3=WD(100=72.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTCCTGGACTGTTCTCG
R:
TCTCTCAGGAGTGGCTTCTCG
Band lengths:
298-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types