GgaEX0000354 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2263890-2274138:+
Coord C1 exon
chr27:2263890-2264630
Coord A exon
chr27:2266371-2266436
Coord C2 exon
chr27:2274067-2274138
Length
66 bp
Sequences
Splice sites
3' ss Seq
GATACTACGTTCCCTCCCAGGTT
3' ss Score
6.52
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
TTGGCCAAAAATAAATCCTAGGATGAGGATCTTTGCTTTTTTCTCCTAGTCATGCAGTATGGATGGGAAGCTGTGAAACCTTTAGTCATAACGCTCCGGTCCTGTGTTTTCCTTTTAATAAAGCATCCAGTGGGAGAATGTGACATAATTGGTTTCTTGGATTAAGAGATCTTGAAATGGCTGGTGCTACAGAGAGAAGATGAACCTCTCCATCAGGGTTGTGGTTTACGTACAGTAATATGGTGACAAAATCATGTTGTTATTGCATGGTAATCTCATATTTCTCTTGCAAGAAAATGCTCTCTACGTGGTTATGCTTCAAAACAGGCACTTTTGAGTCTTGTCAGTGGCACAGAATCTTAAATCTTTCCTTTCCTTGCATTGCATAATCTGAACGTTATTCTCCCACAGCAGCAGAAATGATGGAAGAATTGCATAGCCTGGACCCACGAAGGCAGGAACTACTGGAGGCCAGGTTCACCGGGGTTGGTGTTGCTAAG
Seq A exon
GTTGGTGCTTCAAATTCCCTCCCTACCCCCCCAAGTCTCCGTCCGTCATGCTCCGCACTGGCATTG
Seq C2 exon
GGTCCATTAAATAGCGAGTCTTCCAACCAGAGCTTATGCAGCGTGGGTTCTCTCAGTGATAAAGAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=1.000 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTTATTCTCCCACAGCAGC
R:
ATCACTGAGAGAACCCACGCT
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]