GgaEX0000355 @ galGal3
Exon Skipping
Gene
ENSGALG00000000410 | TLK2
Description
NA
Coordinates
chr27:2266371-2274138:+
Coord C1 exon
chr27:2266371-2266436
Coord A exon
chr27:2269457-2269645
Coord C2 exon
chr27:2274067-2274138
Length
189 bp
Sequences
Splice sites
3' ss Seq
AATCTCTTGATTTGCTGCAGAAT
3' ss Score
7.2
5' ss Seq
GAGGTGCGG
5' ss Score
6.79
Exon sequences
Seq C1 exon
GTTGGTGCTTCAAATTCCCTCCCTACCCCCCCAAGTCTCCGTCCGTCATGCTCCGCACTGGCATTG
Seq A exon
AATTCAGAATAATTTGGGCTGCATTGGCCTGAGGTAGTGAAGCAGATCTCCGCCACTGAGTTAGCAAGAGAGTTTTGCAACGCACGTAACTCCACATGTGAGACTCCAGCTAGGCAGCTTGGATTCCTAGAGCTCTCTTCCAGTATGAGGAGTTGCAGAACACAAAATGGAGGCTGCCCAACGGAAGAG
Seq C2 exon
GGTCCATTAAATAGCGAGTCTTCCAACCAGAGCTTATGCAGCGTGGGTTCTCTCAGTGATAAAGAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000410-'1-4,'1-3,2-4
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.333 C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGTGCTTCAAATTCCCTCC
R:
CTCCAGTTCTTTATCACTGAGAGA
Band lengths:
138-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]